Journal of Dairy Science
Volume 92, Issue 3 , Pages 870-886 , March 2009

Temporal gene expression and probiotic attributes of Lactobacillus acidophilus during growth in milk

  • M.A. Azcarate-Peril

      Affiliations

    • Current address: Department of Cell and Molecular Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
    • ,
  • R. Tallon

      Affiliations

    • Current address: SAF-ISIS, Aquitaine, France.
    • ,
  • T.R. Klaenhammer

      Affiliations

    • Corresponding Author InformationCorresponding author.

Received 15 June 2008 ,Accepted 5 November 2008.

References 

  1. Altermann E, Buck LB, Cano R, Klaenhammer TR. Identification and phenotypic characterization of the cell-division protein CdpA. Gene. 2004;342:189–197
  2. Altermann E, Russell WM, Azcarate-Peril MA, Barrangou R, Buck BL, McAuliffe O, et al. Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc. Natl. Acad. Sci. USA. 2005;102:3906–3912
  3. Azcarate-Peril MA, Bruno-Barcena JM, Hassan HM, Klaenhammer TR. Transcriptional and functional analysis of oxalyl-coenzyme A (CoA) decarboxylase and formyl-CoA transferase genes from Lactobacillus acidophilus. Appl. Environ. Microbiol. 2006;72:1891–1899
  4. Azcarate-Peril MA, McAuliffe O, Altermann E, Lick S, Russell WM, Klaenhammer TR. Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus. Appl. Environ. Microbiol. 2005;71:5794–5804
  5. Barefoot SF, Klaenhammer TR. Detection and activity of lacticin B, a bacteriocin produced by Lactobacillus acidophilus. Appl. Environ. Microbiol. 1983;71:4925–4929
  6. Barrangou R, Azcarate-Peril MA, Duong T, Conners SB, Kelly RM, Klaenhammer TR. Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays. Proc. Natl. Acad. Sci. USA. 2006;103:3816–3821
  7. Buck BL, Altermann E, Svingerud T, Klaenhammer TR. Functional analysis of putative adhesion factors in Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 2005;71:8344–8351
  8. Buck, B. L., M. A. Azcarate Peril, and T. Klaenhammer. 2008. Role of autoinducer-2 on the adhesion ability of Lactobacillus acidophilus. J. Appl. Microbiol. In press.
  9. Carr FJ, Chill D, Maida N. The lactic acid bacteria: A literature survey. Crit. Rev. Microbiol. 2002;28:281–370
  10. Cesena C, Morelli L, Alander M, Siljander T, Tuomola E, Salminen S, et al. Lactobacillus crispatus and its nonaggregating mutant in human colonization trials. J. Dairy Sci. 2001;84:1001–1010
  11. Champagne CP, Gardner NJ, Roy D. Challenges in the addition of probiotic cultures to foods. Crit. Rev. Food Sci. Nutr. 2005;45:61–84
  12. Cui X, Churchill GA. Statistical tests for differential expression in cDNA microarray experiments. Genome Biol. 2003;4:210
  13. Duong T, Barrangou R, Russell WM, Klaenhammer TR. Characterization of the tre locus and analysis of trehalose cryoprotection in Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 2006;72:1218–1225
  14. Fabret C, Hoch JA. A two-component signal transduction system essential for growth of Bacillus subtilis: Implications for anti-infective therapy. J. Bacteriol. 1998;180:6375–6383
  15. Fonseca F, Beal C, Corrieu G. Method of quantifying the loss of acidification activity of lactic acid starters during freezing and frozen storage. J. Dairy Res. 2000;67:83–90
  16. Gorke B, Stulke J. Carbon catabolite repression in bacteria: Many ways to make the most out of nutrients. Nat. Rev. Microbiol. 2008;6:613–624
  17. Grangette C, Nutten S, Palumbo E, Morath S, Hermann C, Dewulf J, et al. Enhanced antiinflammatory capacity of a Lactobacillus plantarum mutant synthesizing modified teichoic acids. Proc. Natl. Acad. Sci. USA. 2005;102:10321–10326
  18. Hegde P, Qi R, Abernathy K, Gay C, Dharap S, Gaspard R, et al. A concise guide to cDNA microarray analysis. Biotechniques. 2000;29:548–562
  19. Hisbergues M, Magi M, Rigaux P, Steuve J, Garcia L, Goudercourt D, et al. In vivo and in vitro immunomodulation of Der p 1 allergen-specific response by Lactobacillus plantarum bacteria. Clin. Exp. Allergy. 2007;37:1286–1295
  20. Hutkins R. Cultured dairy products. Microbiology and Technology of Fermented Foods. Ames, Iowa: Blackwell Publishing; 2006;Pages 107–114
  21. Kunz C, Rudloff S, Baier W, Klein N, Strobel S. Oligosaccharides in human milk: Structural, functional, and metabolic aspects. Annu. Rev. Nutr. 2000;20:699–722
  22. Law J, Buist G, Haandrikman A, Kok J, Venema G, Leenhouts K. A system to generate chromosomal mutations in Lactococcus lactis which allows fast analysis of targeted genes. J. Bacteriol. 1995;177:7011–7018
  23. Leonard BAB, Podbielski A. Emerging density-dependent control systems in Gram-positive cocci. In:  Dunny GM,  Winans SC editor. Cell-Cell Signaling in Bacteria. Washington, DC: American Society for Microbiology; 1999;p. 315–331
  24. Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ. Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. BMC Bioinformatics. 2005;6:106
  25. Marcotte H, Ferrari S, Cesena C, Hammarstrom L, Morelli L, Pozzi G, et al. The aggregation-promoting factor of Lactobacillus crispatus M247 and its genetic locus. J. Appl. Microbiol. 2004;97:749–756
  26. Mattila-Sandholm T, Myllarinen P, Crittenden R, Mogensen G, Fonden R, Saarela M. Technological challenges for future probiotic foods. Int. Dairy J. 2002;12:173–182
  27. McAuliffe O, Cano RJ, Klaenhammer TR. Genetic analysis of two bile salt hydrolase activities in Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 2005;71:4925–4929
  28. Monnet V, Nardi M, Chopin A, Chopin MC, Gripon JC. Biochemical and genetic characterization of PepF, an oligopeptidase from Lactococcus lactis. J. Biol. Chem. 1994;269:32070–32076
  29. Ouwehand AC, Tuomola EM, Tolkko S, Salminen S. Assessment of adhesion properties of novel probiotic strains to human intestinal mucus. Int. J. Food Microbiol. 2001;64:119–126
  30. Pastar I, Tonic I, Golic N, Kojic M, van Kranenburg R, Kleerebezem M, et al. Identification and genetic characterization of a novel proteinase, PrtR, from the human isolate Lactobacillus rhamnosus BGT10. Appl. Environ. Microbiol. 2003;69:5802–5811
  31. Peltoniemi K, Vesanto E, Palva A. Genetic characterization of an oligopeptide transport system from Lactobacillus delbrueckii subsp. bulgaricus. Arch. Microbiol. 2002;177:457–467
  32. Reid G, Sanders ME, Gaskins HR, Gibson GR, Mercenier A, Rastall R, et al. New scientific paradigms for probiotics and prebiotics. J. Clin. Gastroenterol. 2003;37:105–118
  33. Russell WM, Klaenhammer TR. Efficient system for directed integration into the Lactobacillus acidophilus and Lactobacillus gasseri chromosomes via homologous recombination. Appl. Environ. Microbiol. 2001;67:4361–4364
  34. Sanders ME, Klaenhammer TR. Invited review: The scientific basis of Lactobacillus acidophilus NCFM functionality as a probiotic. J. Dairy Sci. 2001;84:319–331
  35. Savijoki K, Ingmer H, Varmanen P. Proteolytic systems of lactic acid bacteria. Appl. Microbiol. Biotechnol. 2006;71:394–406
  36. Shah NP. Probiotic bacteria: Selective enumeration and survival in dairy foods. J. Dairy Sci. 2000;83:894–907
  37. Smeianov VV, Wechter P, Broadbent JR, Hughes JE, Rodriguez BT, Christensen TK, et al. Comparative high-density microarray analysis of gene expression during growth of Lactobacillus helveticus in milk versus rich culture medium. Appl. Environ. Microbiol. 2007;73:2661–2672
  38. Spellerberg B, Rozdzinski E, Martin S, Weber-Heynemann J, Lutticken R. rgf encodes a novel two-component signal transduction system of Streptococcus agalactiae. Infect. Immun. 2002;70:2434–2440
  39. Sturme MH, Nakayama J, Molenaar D, Murakami Y, Kunugi R, Fujii T, et al. An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence. J. Bacteriol. 2005;187:5224–5235
  40. Tatusov RL, Koonin EV, Lipman DJ. A genomic perspective on protein families. Science. 1997;278:631–637
  41. Titgemeyer F, Hillen W. Global control of sugar metabolism: A gram-positive solution. Antonie Van Leeuwenhoek. 2002;82:59–71
  42. Tuomola E, Crittenden R, Playne M, Isolauri E, Salminen S. Quality assurance criteria for probiotic bacteria. Am. J. Clin. Nutr. 2001;73(Suppl):393S–398S
  43. Vinciotti V, Khanin R, D’Alimonte D, Liu X, Cattini N, Hotchkiss G, et al. An experimental evaluation of a loop versus a reference design for two-channel microarrays. Bioinformatics. 2005;21:492–501
  44. Vishwanath S, Ramphal R. Adherence of Pseudomonas aeruginosa to human tracheobronchial mucin. Infect. Immun. 1984;45:197–202

PII: S0022-0302(09)70395-9

doi: 10.3168/jds.2008-1457

Journal of Dairy Science
Volume 92, Issue 3 , Pages 870-886 , March 2009

Article Tools

* Image Usage & Resolution