Rapid detection of bovine milk in yak milk using a polymerase chain reaction technique
Article Outline
- Abstract
- Introduction
- Materials and Methods
- Results
- Discussion
- Acknowledgments
- Supplementary data
- References
- Copyright
Abstract
Yak milk contains a greater percentage of protein and has better quality than bovine milk. There has been an increasing focus on yak milk and milk products during the last few years. In the present study, a PCR-based assay was developed for the specific identification of bovine milk in yak milk by designing 3 primers targeting the mitochondrial ND1 gene. The use of 3 primers in a single PCR reaction set yielded 2 amplification fragments of 293 and 190 bp from bovine milk DNA, whereas only 1 amplification fragment of 293 bp was obtained in yak milk DNA. The technique was applied to raw and heat-treated binary mixtures of yak and bovine milks and enabled the specific detection of bovine milk with a detection limit of 0.1%. The assay developed is sensitive, fast, and straightforward, and it might be useful in the quality control of yak milk and milk products.
Key words: yak milk, bovine milk, ND1 gene, polymerase chain reaction
Introduction
The yak has been regarded as one of the most remarkable domestic animals, because it thrives in conditions of extreme harshness while providing a livelihood for people with milk, meat, fur, and other products (Sasaki, 1994; Wiener et al., 2003). Yak milk has a better quality (i.e., it contains a greater percentage of protein) compared with bovine milk (Wang and Zou, 1995). Thus, there has been an increasing focus on yak milk and milk products in recent years (Fan et al., 2000). In general terms, however, the milk yield of yak is relatively low compared with that of the bovine. Therefore, to prevent the adulteration of yak milk with bovine milk, it is necessary to develop a rapid and sensitive method for the identification of bovine milk in yak milk to ensure the quality of yak milk and milk products.
To date, various different approaches have been developed for the identification of animal origin of food products, such as 2-dimensional electrophoresis (Chianese et al., 1990), isoelectric focusing (Addeo et al., 1990; Moio et al., 1990), capillary electrophoresis (Molina et al., 1999; Recio et al., 2004), HPLC (De Noni et al., 1996; Mayer et al., 1997; Moatsou et al., 2004), ELISA (Haza et al., 1997; Richter et al., 1997; Hurley et al., 2004a,b), and chromatographic techniques (Urbanke et al., 1992; Torre et al., 1996; Bramanti et al., 2001). Most of these techniques proved to be effective and were widely put into practice. Chromatographic methods can detect differences in the percentages of the fatty acids but are laborious (Branciari et al., 2000), and protein-based methods may fail in the analysis of heat-treated materials (Reale et al., 2008).
More recently, DNA-based techniques, especially PCR-based methods, for the identification of the animal origin of food products have received particular attention and have proved to be reliable, sensitive, and fast (Colgan et al., 2001; Rodríguez et al., 2002; Bottero et al., 2003; Dalmasso et al., 2004; López-Calleja et al., 2005).
Ruminant milk contains somatic cells including leukocytes and epithelial mammary cells. Studies have demonstrated that these cells can be used as a DNA source to discriminate animal species by PCR amplification of specific target sequences (Lipkin et al., 1993; Amills et al., 1997; Maudet and Taberlet, 2001). The purpose of the present work was to develop a fast, sensitive, and straightforward protocol for the detection of bovine milk in yak milk by targeting the ND1 gene of mitochondrial DNA.
Materials and Methods
Milk Samples and DNA Extraction
Raw milks from bovine (Bos taurus) and yak (Bos grunniens) were collected from local farmer. The milk samples were transported to the laboratory under refrigeration and were stored frozen at −20°C until analyzed.
Bovine milk, yak milk, and mixtures of yak milk mixed with bovine milk were prepared for DNA extraction and PCR amplification in the following percentages (%, vol/vol): 50:50, 80:20, 90:10, 95:5, 97.5:2.5, 99:1, 99.5:0.5, and 99.9:0.1. In addition to raw milk, we also analyzed pasteurized (65°C, 30
min) and sterilized (121°C, 20
min) milks (López-Calleja et al., 2004). We extracted DNA from raw and heat-treated milk mixtures according to the described method of López-Calleja et al. (2004). The DNA concentration of each sample was estimated by spectrophotometry at 260
nm.
Primer Design
The mitochondrial ND1 gene was selected as the target sequence based on the information obtained from the alignment of mitochondrial DNA complete sequences of bovine and yak in GenBank (bovine: accession no. AF492351, AY526085, AB074962, AY676857, and AB074963; yak: accession no. AY684273, EF494177, EF494178, and EF494179). A pair of primers (BO/YA-FW: 5′-GAAAAGGTCCAAATGTCGTAGGT-3′ and BO/YA-RV: 5′-TCCGATTAGTGCGTATTTTGAGT-3′) targeting the ND1 gene with 100% homology between bovine and yak were designed. This set of primers was expected to yield a 293-bp fragment in both bovine and yak. In addition, a bovine-specific extension primer (BO-FW: 5′-CTCAATATTTATCCTAGCACCTATCA-3′) was designed in the potential amplification region of BO/YA-FW and BO/YA-RV primers (Figure 1).

Figure 1.
Sequence alignment of ND1 gene fragment from bovine and yak. Large open arrows indicate the 2 primers common to both bovine and yak (BO/YA-FW and BO/YA-RV); the narrow black arrow indicates the bovine-specific primer (BO-FW). In the position of primer BO-FW, nucleotides that differ between bovine and yak are boxed.
Combination of the BO-FW and BO/YA-RV primers was expected to amplify a 190-bp fragment in bovine but not in yak because of the mismatches of the BO-FW primer, which provides the unambiguous determination of bovine and yak. The 293-bp fragment amplified by BO/YA-FW and BO/YA-RV primers common to both bovine and yak acts as a positive control in practical milk detection.
The suitability of the primer sets designed in the present work was confirmed by challenging them with milk DNA of different breeds of bovine (Chinese Holstein, Caoyuan Red, and Sanhe) and yak (Tianzhu White, Maiwa, Jiulong, and Datong) in preliminary PCR amplification experiments.
PCR Amplification
After the suitability of the designed primer sets was evaluated, raw and heat-treated binary mixtures of yak milk containing different amounts of bovine milk were tested for the expected DNA fragment amplification.
The PCR reaction was performed in a final volume of 25
μL containing 1 U of AmpliTaq Gold DNA polymerase (Applied Biosystems, Branchburg, NJ), 1
×
PCR buffer (TaKaRa, Dalian, China), 1.5
mM MgCl2, 200
μM of each dNTP, 10 pmol of each primer, and 100
ng of template DNA. Amplification was carried out in a TC-512 Gradient Thermal Cycler (Techne, Stone, UK) with the following program: initial denaturation step at 95°C for 12
min, 30 cycles at 95°C for 30s, 60°C for 30
s, 72°C for 30
s, and a final extension at 72°C for 5
min. The PCR products were resolved by electrophoresis on a 1.5% agarose gel at 100
V for 40
min and stained with ethidium bromide.
To investigate the detection limit of the protocol developed in the present work, each binary milk mixture of bovine and yak milks containing bovine milk ranging from 0.1 to 50% (vol/vol) was subjected to PCR amplification, and the obtained products were detected by agarose gel electrophoresis.
Cloning and Sequencing of PCR Products
The PCR products of the expected length from DNA extracted from bovine and yak milk using the BO/YA-FW and BO/YA-RV primers were purified and cloned into the pMD18-T vector (TaKaRa), and then transformed into competent Escherichia coli DH5α cells. The identified positive clone with the ND1 gene fragment was sequenced by an ABI Prism 377 DNA sequencer (Perkin-Elmer Cetus Instruments, Norwalk, CT). The sequence alignments and comparisons were carried out with Bioedit software (Hall, 1999).
Results
In the present work, an assay based on PCR was developed for rapid detection of bovine milk in yak milk. Based on the information obtained after alignment of mitochondrial ND1 gene from bovine and yak in GenBank, a pair of primers BO/YA-FW (forward) and BO/YA-RV (reverse) targeting the ND1 gene were designed with 100% homology between bovine and yak. This set of primers was expected to yield a 293-bp fragment in the ND1 gene of both bovine and yak. As observed in Figure 2, the expected PCR fragment (293 bp) was successfully amplified with the BO/YA-FW and BO/YA-RV primer pair in bovine and yak. In addition, a bovine-specific forward primer BO-FW was designed in the potential amplification region of BO/YA-FW and BO/YA-RV primers. This primer, along with the conserved reverse BO/YA-RV primer, was expected to amplify a bovine-specific fragment of 190 bp in the ND1 gene. As can be seen in Figure 3, the DNA extracted from bovine milk was successfully amplified with the BO-FW and BO/YA-RV primer pair, yielding the expected amplification fragment of 190 bp, but no amplification signals were observed with the DNA extracted from yak milk samples because of the mismatches of BO-FW primer, which provides the unambiguous determination of bovine and yak milk.

Figure 2.
Electrophoretic analysis of the ND1 gene PCR amplification fragments obtained from bovine (lane 1 and 3) and yak (lane 2 and 4) milk DNA using primers BO/YA-FW and BO/YA-RV. M
=
molecular weight marker, 100-bp DNA ladder (TaKaRa, Dalian, China); N = negative control.

Figure 3.
Electrophoretic analysis of the bovine-specific ND1 gene amplification from milk samples using primers BO-FW and BO/YA-RV. Samples are bovine (lanes 1, 3, and 5) and yak (lanes 2 and 4). M
=
molecular weight marker, 100-bp DNA ladder (TaKaRa, Dalian, China); N
=
negative control.
When PCR amplifications were performed using 3 primers (BO/YA-FW, BO-FW, and BO/YA-RV) in a single reaction set, the DNA from bovine milk yielded 2 amplification fragments (293 and 190 bp), whereas the DNA from yak milk yielded only 1 amplification fragment of 293 bp (Figure 4). Moreover, similar amplification patterns to those obtained for the DNA from bovine milk were generated on the DNA extracted from binary raw milk mixtures (bovine in yak) containing 5, 20, and 50% (vol/vol) bovine milk. Thus, the bovine-specific amplification fragment of 190 bp can be used to detect the presence of bovine milk in yak milk, and the 293-bp fragment common to bovine and yak acts as a positive control in practical milk detection.

Figure 4.
Electrophoretic analysis of the ND1 gene PCR amplification fragments obtained from bovine (lane 2), yak (lanes 1, 3, and 7), and binary mixture of bovine/yak milk containing 50% (lane 4), 20% (lane 5), and 5% (lane 6) bovine DNA using primers BO/YA-FW, BO-FW, and BO/YA-RV. M
=
molecular weight marker, 100-bp DNA ladder (TaKaRa, Dalian, China); N
=
negative control.
To investigate the detection limit of the assay developed in this study, each binary milk mixture of bovine/yak milk containing bovine milk at a range of percentages, (50, 20, 10, 5, 2.5, 1, 0.5 and 0.1%, vol/vol) was subjected to PCR amplification, and the obtained products were detected by agarose gel electrophoresis. As shown from Figure 5, for the bovine-specific 190-bp fragment generated on the DNA from binary milk mixtures of bovine/yak, the band intensity was related to the amount of template DNA, and the lowest percentage of bovine milk in yak milk obtained was 0.1%.

Figure 5.
Electrophoretic analysis of the ND1 gene PCR amplification fragments obtained from raw milk binary mixtures of bovine in yak by using primers BO/YA-FW, BO-FW, and BO/YA-RV. Samples are 100% bovine (lane 1), 10% bovine (lane 2), 5% bovine (lane 3), 1% bovine (lane 4), 0.5% bovine (lane 5), 0.1% bovine (lane 6), and 100% yak (lane 7). M
=
molecular weight marker, 100-bp DNA ladder (TaKaRa, Dalian, China); N
=
negative control.
For the purpose of investigating the applicability of the assay to heat-treated milk, 30 milk samples including raw milk, pasteurized milk (65°C, 30
min), and sterilized milk (121°C, 20
min) were prepared and tested using the assay developed in the present work. The results obtained are listed in Table 1. As shown in Table 1, the 2 amplification bands of 293 bp (common to bovine and yak) and 190 bp (bovine-specific) were always present in the pure bovine milk and binary mixtures of yak/bovine milk, whereas only the 293-bp band was present in the samples of pure yak milk (the bovine-specific 190-bp band was absent). Moreover, the amplification patterns and detection limits were similar among raw, pasteurized, and sterilized milks, suggesting that the assay developed also applies to DNA from heat-treated milk and milk products. In addition, 3 milk samples (no. 4, 12, and 25) failed to generate the expected bands of 293 and 190 bp, because DNA polymerase was deliberately not added in the 3 PCR reaction sets, which means that a negative result indicates experimental error.
Table 1. List of 30 milk samples tested in this study by using the assay developed and the results obtained1
| Milk sample no. | Type of milk sample2 | Proportion of binary milk mixture (yak: bovine, %) | Product of PCR amplification3 | |
|---|---|---|---|---|
| 293-bp band | 190-bp band | |||
| 1 | RA | 0: 100 | Present | Present |
| 2 | RA | 50: 50 | Present | Present |
| 3 | RA | 80: 20 | Present | Present |
| 4 | RA | 90: 10 | Absent | Absent |
| 5 | RA | 95: 5 | Present | Present |
| 6 | RA | 97.5: 2.5 | Present | Present |
| 7 | RA | 99: 1 | Present | Present |
| 8 | RA | 99.5: 0.5 | Present | Present |
| 9 | RA | 99.9: 0.1 | Present | Present |
| 10 | RA | 100: 0 | Present | Absent |
| 11 | PA | 0: 100 | Present | Present |
| 12 | PA | 50: 50 | Absent | Absent |
| 13 | PA | 80: 20 | Present | Present |
| 14 | PA | 90: 10 | Present | Present |
| 15 | PA | 95: 5 | Present | Present |
| 16 | PA | 97.5: 2.5 | Present | Present |
| 17 | PA | 99: 1 | Present | Present |
| 18 | PA | 99.5: 0.5 | Present | Present |
| 19 | PA | 99.9: 0.1 | Present | Present |
| 20 | PA | 100: 0 | Present | Absent |
| 21 | ST | 0: 100 | Present | Present |
| 22 | ST | 50: 50 | Present | Present |
| 23 | ST | 80: 20 | Present | Present |
| 24 | ST | 90: 10 | Present | Present |
| 25 | ST | 95: 5 | Absent | Absent |
| 26 | ST | 97.5: 2.5 | Present | Present |
| 27 | ST | 99: 1 | Present | Present |
| 28 | ST | 99.5: 0.5 | Present | Present |
| 29 | ST | 99.9: 0.1 | Present | Present |
| 30 | ST | 100: 0 | Present | Absent |
1Milk sample nos. 4, 12, and 25 failed to provide the expected bands of 293 and 190 bp because DNA polymerase was deliberately not added in the 3 PCR reaction sets. |
2RA |
3Presence and absence of 293- or 190-bp bands in the tested samples. |
Discussion
In recent years, numerous methods based on DNA detection have been developed for the identification of animal origin of food products, most of which are based on specific PCR amplification of mitochondrial or nuclear DNA (Bania et al., 2001; Maudet and Taberlet, 2001; Rea et al., 2001; Bottero et al., 2002; Mafra et al., 2004). In the present work, a PCR assay for rapid detection of bovine milk in yak milk was developed using 3 primers designed to target the mitochondrial ND1 gene. Theoretically, mitochondrial DNA has some advantages over nuclear DNA (Unseld et al., 1995). The greater number of copies of mitochondrial DNA compared with nuclear DNA improve the success and yield of DNA extraction in any given sample. On the other hand, compared with nuclear DNA, the relatively higher mutation rate has resulted in the accumulation of a wide range of base substitutions in mitochondrial DNA making it easier to identify species differences. Therefore, the ND1 gene encoded by mitochondrial DNA was selected to identify bovine and yak in this study.
The 3 primers BO/YA-FW, BO-FW, and BO/YA-RV were designed based on the sequence alignment of the ND1 gene of bovine and yak available in GenBank. The suitability of the primer pair amplification was verified on DNA extracted from milk samples of different breeds of bovine (Chinese Holstein, Caoyuan Red, and Sanhe) and yak (Tianzhu White, Maiwa, Jiulong, and Datong), and the sequencing analysis of the amplicons of primer pair BO/YA-FW and BO/YA-RV revealed the expected haplotypes for bovine and yak. Theoretically, DNA might undergo denaturation at elevated temperature and other processing treatments of milk and milk products. To improve the amplification chances for the DNA extracted from heat-treated or processed milk and milk products that might be degraded, the length of amplified fragments was restricted to within 300 bp (293 and 190 bp) in this work. The assay was also tested with both pasteurized (65°C, 30
min) and sterilized (121°C, 20
min) milk. We verified that the method developed applies to DNA extracted from heat-treated milk samples (Table 1). Previously, López-Calleja et al. (2004, 2005) reported the similar results in the detection of cow milk in goat and sheep milk, and of goat milk in sheep milk by amplifying the target sequence of the 12S rRNA gene in mitochondrial DNA. However, in this work, the DNA from other processed milk and milk products (such as cheese) were not tested, assuming that the assay is also applicable to them.
Methods based on PCR have been shown to be a suitable technique in detecting adulteration of food products of animal origin (Tartaglia et al., 1998; Partis et al., 2000; Reale et al., 2008). However, PCR itself is so sensitive that suboptimal conditions might provide a negative result even in the presence of the target DNA template (Kudo et al., 1993). Therefore, the use of a positive control is essential in practical use. In this work, the bovine-specific amplification fragment of 190 bp (amplified with primer pair BO-FW and BO/YA-RV) can be used to detect the presence of bovine milk in yak milk, and the 293-bp fragment (amplified with primer pair BO/YA-FW and BO/YA-RV common to both bovine and yak) acts as a positive control in practical detection of milk samples. Thus, the samples from pure bovine milk or binary milk mixtures of bovine/yak unequivocally gave 2 amplification fragments of 293 and 190 bp, and the samples from pure yak milk provided only a 293-bp fragment (Figure 4); negative results from samples analyzed indicated an experimental error, as seen in the sample numbers 4, 12, and 25 in this study (Table 1).
The sensitivity of the method for detection of bovine milk in yak milk was evaluated using dilutions of milk samples from bovine and yak. Figure 5 shows that the lower the percentage of bovine milk in the binary milk mixtures of bovine and yak, the fainter the 190-bp bovine-specific band in the agarose gel. The lowest milk percentage (amplifying a visible band of 190 bp on agarose gel stained with ethidium bromide) was 0.1% bovine milk in the binary milk mixture. The detection limit obtained from heat-treated milk samples was not modified substantially compared with raw milk mixtures. The same detection limit of 0.1% was obtained in detection of cow milk in goat milk and sheep (López-Calleja et al., 2004), of cow milk in goat cheese (Maudet and Taberlet, 2001), and of goat milk in sheep milk (López-Calleja et al., 2005) by amplifying the target sequence of mitochondrial DNA, being lower than that obtained using a duplex PCR methods for identification of cow milk in goat and sheep milk in dairy products (Bottero et al., 2003). The latter allowed the detection of 0.5% cow milk.
In the present work, a PCR-based assay able to detect bovine milk in yak milk with a detection limit of 0.1% was developed by amplifying the target sequence of the ND1 gene in mitochondrial DNA. The assay proved to be sensitive, fast, and straightforward. Two PCR fragments, a bovine-specific PCR fragment and a PCR fragment present in both bovine and yak, can be detected simultaneously in a single reaction set. To our knowledge, this is the first description of a method allowing identification of bovine milk in yak milk. The technique might be useful in the quality control of yak milk and milk products and in protecting the interests of consumers.
Acknowledgments
We thank J. Wang from Southwest University for Nationalities (Chengdu, China) for valuable guidance and encouragement. We also thank the anonymous reviewers for substantial suggestions in improving this paper.
Supplementary data
Interpretive summary.
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PII: S0022-0302(09)70446-1
doi:10.3168/jds.2008-1727
© 2009 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

