« Previous
Next »
Journal of Dairy Science
Volume 93, Issue 5
, Pages 2229-2238
, May 2010
Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms
References
- . Experiments with a new boosting algorithm. In: Saitta L editors. Proceedings of the Thirteenth International Conference on Machine Learning. San Francisco, CA: Morgan Kaufmann; 1996;p. 148–156
- . Reproducing kernel Hilbert spaces regression methods for genomic assisted prediction of quantitative traits. Genetics. 2008;178:2289–2303
- . Model-based inference of haplotype block variation. J. Comput. Biol. 2004;11:493–504
- . Genomic selection using low-density SNP. Genetics. 2009;182:343–353
- . A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 2009;5:e1000529
- . A block-free hidden Markov model for genotypes and its application to disease association. J. Comput. Biol. 2005;12:1243–1260
- . Detection of sharing by descent, long-range phasing and haplotype imputation. Nat. Genet. 2008;40:1068–1075
- . Efficient inference of haplotypes from genotypes on a pedigree. J. Bioinform. Comput. Biol. 2003;1:41–69
- . Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics. 2003;165:2213–2233
- . Comparison of haplotyping methods using families and unrelated individuals on simulated rheumatoid arthritis data. BMC Proc. 2007;1(Suppl. 1):S55
- . Mach 1.0: Rapid haplotype reconstruction and missing genotype inference. Am. J. Hum. Genet. 2006;79:
- . A new multipoint method for genome-wide association studies by imputation of genotypes. Nat. Genet. 2007;39:906–913
- . Prediction of total genetic value using genome-wide dense marker maps. Genetics. 2001;157:1819–1829
- . Inference of population structure using multilocus genotype data. Genetics. 2000;155:945–959
- . A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 2006;78:629–644
- . SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat. Methods. 2008;5:247–252
- . Reliability of genomic predictions for North American dairy bulls. J. Dairy Sci. 2009;92:16–24
- . High-resolution haplotype block structure in the cattle genome. BMC Genet. 2009;10:19
- . Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers. J. Dairy Sci. 2009;92:5248–5257
- . Transition of genomic evaluation from a research project to a production system. J. Anim. Sci. 2009;87(E-Suppl. 2):313–314(Abstr.)
- . A comparison of several methods for haplotype frequency estimation and haplotype reconstruction for tightly linked markers for general pedigrees. Genet. Epidemiol. 2006;30:423–437
- . A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol. 2009;10:R42
PII: S0022-0302(10)00213-4
doi: 10.3168/jds.2009-2849
© 2010 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.
« Previous
Next »
Journal of Dairy Science
Volume 93, Issue 5
, Pages 2229-2238
, May 2010
