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Review| Volume 104, ISSUE 1, P1-19, January 2021

Invited review: Probiotic yogurt quality criteria, regulatory framework, clinical evidence, and analytical aspects

      ABSTRACT

      Yogurt is a milk-based product manufactured by lactic acid fermentation enabled by symbiotic yogurt cultures. Yogurt is largely considered to be a health product, and it is employed to deliver probiotics and prebiotics to the consumer. However, not all yogurts are probiotic, neither are they all functional products. There is increasing demand for health-promoting beverages, which is prompting the dairy industry to develop functional probiotic yogurts to meet the demand. However, there seems to be a scarcity of reviews providing critical information on regulatory frameworks in regions of the world, clinical trial outcomes, and methodological approaches for enumerating multiprobiotic strains in yogurt. This review, relating to functional probiotic yogurt, covers the newest information on the topic for the period mostly between 2014 and 2019. Conformance to regulations is paramount and hence, global regulatory frameworks for probiotic yogurt and prebiotic and nonprebiotic ingredients included in yogurt are reviewed. The paper emphasizes the need for convincing clinical trial outcomes that provide the dairy industry with an opportunity to market products with substantiated beneficial claims. The paper also discusses probiotic strains in functional yogurt, which is required to have population levels above the recommended therapeutic minimum during shelf life. The multiprobiotic species added to yogurt may present challenges relating to methodological and analytical approaches needed to determine viability of each strain contained in such yogurt. Hence, the review also presents the pros and cons of the culture-dependent and culture-independent approaches for the enumeration of probiotic cells in yogurt. The review is arguably valuable to the dairy industry, functional food developers, related scientists, and researchers, as well as policy makers.

      Key words

      FERMENTATION AND BENEFITS OF YOGURT PROCESSING

      Fermentation is a food preservation process as old as mankind and is aimed at extending the shelf life and improving the sensory and nutritional quality of foods and beverages (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ;
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). Fermentation is a metabolic process that enables the deriving of energy from an organic substrate without involving an exogenous oxidizing agent (
      • Ray R.C.
      • Joshi V.K.
      Fermented foods: Past, present and future.
      ). Lactic acid fermentation leads to a food matrix of reduced pH, creating harsh conditions for foodborne pathogens in yogurt and other fermented products (
      • Cutrim C.S.
      • de Barros R.F.
      • da Costa M.P.
      • Franco R.M.
      • Conte-Junior C.A.
      • Cortez M.A.S.
      Survival of Escherichia coli O157:H7 during manufacture and storage of traditional and low lactose yogurt.
      ;
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). Worldwide, fermented foods are linked to potential beneficial effects in the consumer (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ).
      Organic acid content and rate of acid production affect viscosity and the gelling properties of yogurt, requiring a constant rate of acid production (
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ). Fermenting milk is, inter alia, advantageous due to release of bioactive peptides or bacteriocins (catalyzed by the proteolytic enzymes of the fermenting cultures); lactose content reduction (
      • Moineau-Jean A.
      • Champagne C.P.
      • Roy D.
      • Raymond Y.
      • LaPointe G.
      Effect of Greek-style yoghurt manufacturing processes on starter and probiotic bacteria populations during storage.
      ), which benefits lactose-intolerant consumers; and generally an improvement in the food's sensory quality (
      • Bisanz J.E.
      • Macklaim J.M.
      • Gloor G.B.
      • Reid G.
      Bacterial metatranscriptome analysis of a probiotic yoghurt using an RNA-Seq approach.
      ;
      • Ray R.C.
      • Joshi V.K.
      Fermented foods: Past, present and future.
      ;
      • Moineau-Jean A.
      • Champagne C.P.
      • Roy D.
      • Raymond Y.
      • LaPointe G.
      Effect of Greek-style yoghurt manufacturing processes on starter and probiotic bacteria populations during storage.
      ).

      PROBIOTIC MICROORGANISMS AND POTENTIAL HEALTH BENEFITS

      Probiotic bacteria are live microorganisms that, when administered in adequate amounts, confer a health benefit on the host (
      • Abd El-Gawad I.A.
      • El-Sayed E.M.
      • El-Zeini H.M.
      • Hafez S.A.
      • Saleh F.A.
      Antibacterial activity of probiotic yoghurt and soy-yoghurt against Escherichia coli and Staphylococcus aureus.
      ;
      • Hill C.
      • Guarner F.
      • Reid G.
      • Gibson G.R.
      • Merenstein D.J.
      • Pot B.
      • Morelli L.
      • Canani R.B.
      • Flint H.J.
      • Salminen S.
      • Calder P.C.
      • Sanders M.E.
      The International Scientific Association for probiotics and prebiotics consensus statement on the scope and appropriate use of the term probiotic.
      ). Yogurt or fermented milk is, reportedly, the most commonly used vehicle for delivering to the consumer probiotic microbial strains generally regarded as safe (GRAS;
      • Bisanz J.E.
      • Macklaim J.M.
      • Gloor G.B.
      • Reid G.
      Bacterial metatranscriptome analysis of a probiotic yoghurt using an RNA-Seq approach.
      ;
      • Moineau-Jean A.
      • Champagne C.P.
      • Roy D.
      • Raymond Y.
      • LaPointe G.
      Effect of Greek-style yoghurt manufacturing processes on starter and probiotic bacteria populations during storage.
      ). Table 1 shows some of the species that are reported to have probiotic potential. Since 1901, when Lactobacillus delbrueckii was named as the first Lactobacillus species, researchers of microbial taxonomy grouped several diverse bacteria (more than 250 species) under the important genus Lactobacillus even though their relatedness was not so close for some species (
      • Zheng J.
      • Wittouck S.
      • Salvetti E.
      • Franz C.M. A.P.
      • Harris H.M.B.
      • Mattarelli P.
      • Toole P.W.O.
      • Pot B.
      • Vandamme P.
      • Walter J.
      • Watanabe K.
      • Wuyts S.
      • Felis G.E.
      • Gänzle M.G.
      • Lebeer S.
      A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae..
      ). Recent years of sophisticated DNA sequencing and analysis have enabled a panel of experts to split the genus Lactobacillus into 25 genera including the emended genus Lactobacillus, which includes host-adapted organisms that have been referred to as the L. delbrueckii group; Paralactobacillus; as well as 23 novel genera: Acetilactobacillus, Agrilactobacillus, Amylolactobacillus, Apilactobacillus, Bombilactobacillus, Companilactobacillus, Dellaglioa, Fructilactobacillus, Furfurilactobacillus, Holzapfelia, Lacticaseibacillus, Lactiplantibacillus, Lapidilactobacillus, Latilactobacillus, Lentilactobacillus, Levilactobacillus, Ligilactobacillus, Limosilactobacillus, Liquorilactobacillus, Loigolactobacillus, Paucilactobacillus, Schleiferilactobacillus, and Secundilactobacillus (
      • Zheng J.
      • Wittouck S.
      • Salvetti E.
      • Franz C.M. A.P.
      • Harris H.M.B.
      • Mattarelli P.
      • Toole P.W.O.
      • Pot B.
      • Vandamme P.
      • Walter J.
      • Watanabe K.
      • Wuyts S.
      • Felis G.E.
      • Gänzle M.G.
      • Lebeer S.
      A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae..
      ). Workers in research institutes and stakeholders in the food industry ought to take note of the current microbial taxonomic changes, some of which are reflected in Table 1, even though previous nomenclature is maintained in the text.
      Table 1Bacterial species most used as probiotic microorganisms (adapted from
      • Prado F.C.
      • Parada J.L.
      • Pandey A.
      • Soccol C.R.
      Trends in non-dairy probiotic beverages.
      ;
      • Zheng J.
      • Wittouck S.
      • Salvetti E.
      • Franz C.M. A.P.
      • Harris H.M.B.
      • Mattarelli P.
      • Toole P.W.O.
      • Pot B.
      • Vandamme P.
      • Walter J.
      • Watanabe K.
      • Wuyts S.
      • Felis G.E.
      • Gänzle M.G.
      • Lebeer S.
      A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae..
      )
      Lactobacillus species (previous genus)Current taxonomic nomenclatureBifidobacterium speciesOther Bifidobacterium species
      Lactobacillus acidophilusNot changedBifidobacterium adolescentisBacillus cereus
      Lactobacillus amylovorousNot changedBifidobacterium animalisClostridium butyricum
      Lactobacillus brevisLevilactobacillus brevisBifidobacterium breveEnterococcus faecalis
      Lactobacillus caseiLacticaseibacillus caseiBifidobacterium bifidumEnterococcus faecium
      Lactobacillus crispatusNot changedBifidobacterium infantisEscherichia coli
      Lactobacillus delbrueckii ssp. bulgaricusNot changedBifidobacterium lactisLactococcus lactis ssp. cremoris
      Lactobacillus fermentumLimosilactobacillus fermentumBifidobacterium longumLactococcus lactis sp. lactis
      Lactobacillus gasseriNot changedLeuconostoc mesenteroides ssp. dextranicum
      Lactobacillus helveticusNot changedPediococcus acidilactici
      Lactobacillus johnsoniiNot changedPropionibacterium freudenreichii
      Lactobacillus lactisLactobacillus delbrueckii ssp. lactisSaccharomyces boulardii
      Lactobacillus paracaseiLacticaseibacillus paracaseiStreptococcus salivarius ssp. thermophilus
      Lactobacillus plantarumLactiplantibacillus plantarum
      Lactobacillus reuteriLimosilactobacillus reuteri
      Lactobacillus rhamnosusLacticaseibacillus rhamnosus
      Table 2 shows some of the potential health benefits that may be derived by hosting probiotics that may be delivered to the consumer by yogurt (Arief and Taufik, 2016). Benefits include gut microbial balance and mineral absorption; prevention of constipation; reduction in serum cholesterol, lactose intolerance, and blood pressure (
      • El-Fattah A.A.
      • Sakr S.
      • El-Dieb S.
      • Elkashef H.
      Angiotensin-converting enzyme inhibition and antioxidant activity of commercial dairy starter cultures.
      ;
      • Zhang T.
      • Jeong C.H.
      • Cheng W.N.
      • Bae H.
      • Seo H.G.
      • Petriello M.C.
      • Han S.G.
      Moringa extract enhances the fermentative, textural, and bioactive properties of yoghurt.
      ); reduction of chances of developing colon cancer (
      • Fijan S.
      Microorganisms with claimed probiotic properties: An overview of recent literature.
      ;
      • Palomar M.M.
      • Maldonado Galdeano C.
      • Perdigón G.
      Influence of a probiotic lactobacillus strain on the intestinal ecosystem in a stress model mouse.
      ;
      • Ribeiro M.C.
      • Chaves K.S.
      • Gebara C.
      • Infante F.N.S.
      • Grosso C.R.F.
      • Gigante M.L.
      Effect of microencapsulation of Lactobacillus acidophilus LA-5 on physicochemical, sensory and microbiological characteristics of stirred probiotic yoghurt.
      ;
      • Moineau-Jean A.
      • Champagne C.P.
      • Roy D.
      • Raymond Y.
      • LaPointe G.
      Effect of Greek-style yoghurt manufacturing processes on starter and probiotic bacteria populations during storage.
      ); prevention of diarrhea, intestinal infections, and inflammatory bowel syndrome (
      • Muniandy P.
      • Shori A.B.
      • Baba A.S.
      Influence of green, white and black tea addition on the antioxidant acidity of probiotic yogurt during refrigerated storage.
      ); and stimulation of the immune system (
      • Innocente N.
      • Biasutti M.
      • Rita F.
      • Brichese R.
      • Comi G.
      • Iacumin L.
      Effect of indigenous Lactobacillus rhamnosus isolated from bovine milk on microbiological characteristics and aromatic profile of traditional yogurt.
      ).
      Table 2Potential health benefits of consuming adequate viable probiotic strains (adapted from
      • Prado F.C.
      • Parada J.L.
      • Pandey A.
      • Soccol C.R.
      Trends in non-dairy probiotic beverages.
      )
      Potential benefitProbiotic strainsOutcomes
      Improved lactose tolerance and digestionLactobacillus johnsonii La1, Lactobacillus salivarius, Lactobacillus acidophilus LBInhibition of the pathogen growth and decreased urease enzyme activity necessary for the pathogen to remain in the acidic environment of the stomach
      Improved intestinal microbial balance
      Prevention or control of Helicobacter pylori infection
      Improvement of intestinal functionL. rhamnosus GG, Lactobacillus casei,Bifidobacterium lactis BB-12, Bifidobacterium bifidum, Streptococcus thermophilusPrevention and treatment of acute diarrhea caused by bacterial infections
      Cholesterol reduction
      Synthesis of B vitamins
      Treatment and prevention of diarrhea caused by pathogenic bacteria and viruses
      Stimulation of the mucosal immune systemL. casei Shirota, L. rhamnosus HN001, L. acidophilus HN017, B. lactis HN019Enhancement of immune parameters
      Colon cancer preventionL. rhamnosus GG, L. rhamnosus LC-705, L. casei Shirota, L. acidophilus LA-2, Bifidobacterium sp., Propionibacterium sp.Prevents or delays onset of cancer in the gut
      Bacterial and yeast vaginitisL. acidophilus; L. rhamnosus GGVaginitis eradicated through restoration of friendly vaginal flora
      Prevention of genitourinary infectionsL. rhamnosus GR-1; Lactobacillus reuteri RC-14Reduced risk of infections through restoration of friendly vaginal flora
      Allergic symptomsL. rhamnosus GG; Bifidobacterium animalis Bb12Prevents onset of allergic diseases
      Inflammatory bowel syndromeL. rhamnosus GGRemediation in inflammatory conditions through modulation of the gastrointestinal microflora
      Yogurt and other fermented milk products accumulate bioactive peptides that have antioxidant activity (
      • Muniandy P.
      • Shori A.B.
      • Baba A.S.
      Influence of green, white and black tea addition on the antioxidant acidity of probiotic yogurt during refrigerated storage.
      ). The bioactive peptides released in milk by selected probiotic strains inhibit angiotensin-converting enzyme (ACE;
      • Zhou T.
      • Huo R.
      • Kwok L.-Y.
      • Li C.
      • Ma Y.
      • Mi Z.
      • Chen Y.
      Effects of applying Lactobacillus helveticus H9 as adjunct starter culture in yogurt fermentation and storage.
      ). Inhibiting ACE is linked to reduced blood pressure or hypertension (
      • Zhou T.
      • Huo R.
      • Kwok L.-Y.
      • Li C.
      • Ma Y.
      • Mi Z.
      • Chen Y.
      Effects of applying Lactobacillus helveticus H9 as adjunct starter culture in yogurt fermentation and storage.
      ). The bioactive peptides inhibit ACE by blocking the conversion of inactive angiotensin I to the vasoconstrictor angiotensin II, which in turn results in an increase in the vasodilator bradykinin, leading to a reduction in blood pressure (
      • El-Fattah A.A.
      • Sakr S.
      • El-Dieb S.
      • Elkashef H.
      Developing functional yogurt rich in bioactive peptides and gamma-aminobutyric acid related to cardiovascular health.
      ). Probiotic milk fermented by Lactobacillus helveticus H9 was shown to have antihypertensive peptides and was shown to inhibit ACE (
      • Chen Y.F.
      • Zhao W.J.
      • Wu R.N.
      • Sun Z.H.
      • Zhang W.Y.
      • Wang J.C.
      • Bilige M.
      • Zhang H.P.
      Proteome analysis of Lactobacillus helveticus H9 during growth in skim milk.
      ), which could contribute to clinical reduction of challenges linked to high blood pressure (
      • El-Fattah A.A.
      • Sakr S.
      • El-Dieb S.
      • Elkashef H.
      Angiotensin-converting enzyme inhibition and antioxidant activity of commercial dairy starter cultures.
      ;
      • Hussain M.
      • Awan F.R.
      • Gujjar A.
      • Hafeez S.
      • Islam M.
      A case control association study of ACE gene polymorphism (I/D) with hypertension in Punjabi population from Faisalabad, Pakistan.
      ). Inhibition of ACE depends on probiotic inoculum size and 7 log10 cfu/mL led to an ACE inhibitory activity of 70% compared with the 30% of the control milk sample (
      • Zhou T.
      • Huo R.
      • Kwok L.-Y.
      • Li C.
      • Ma Y.
      • Mi Z.
      • Chen Y.
      Effects of applying Lactobacillus helveticus H9 as adjunct starter culture in yogurt fermentation and storage.
      ).
      Cancer, a worldwide health challenge, is described as the growth and spreading of uncontrolled abnormal cells in the body (Sah et al., 2015). As cancerous cells become more resistant to chemotherapy (Sah et al., 2015), alternative treatments are needed, and bioactive peptides may induce apoptosis of malignant somatic cells and inhibition of pathogenic bacterial cells (Elfahri et al., 2015; Sah et al., 2015). The mechanism relates to the negatively charged cancer and bacterial cells getting bound by the positively charged peptides from the probiotic milk (Elfahri et al., 2015; Sah et al., 2015). Bioactive peptides can rupture the membranes of the negatively charged cells resulting in their demise (Sah et al., 2015).

      Selection of Health-Promoting Probiotic Strains for Inclusion in Yogurt

      The initial step in probiotic product development is strain selection (
      • Tripathi M.K.
      • Giri S.K.
      Probiotic functional foods: Survival of probiotics during processing and storage.
      ). Strains including Lactobacillus rhamnosus GR-1, and Lactobacillus reuteri RC-14 can retain viability in yogurt during shelf life of the product (
      • Hekmat S.
      • Soltani H.
      • Reid G.
      Growth and survival of Lactobacillus reuteri RC-14 and Lactobacillus rhamnosus GR-1 in yogurt for use as a functional food.
      ;
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ). It is crucial to optimize growth conditions for selected probiotic strains due to possible nonsynergistic interaction between yogurt cultures and probiotic strains (
      • Bisanz J.E.
      • Macklaim J.M.
      • Gloor G.B.
      • Reid G.
      Bacterial metatranscriptome analysis of a probiotic yoghurt using an RNA-Seq approach.
      ). Probiotic strains need to be evaluated as stipulated in Table 3.
      Table 3Guidelines for evaluation of probiotics (adapted from
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      )
      GuidelineBrief explanation
      Genus and species of strainIt is necessary to know the genus and species of the strain. There are possible exceptions to this requirement for certain bacteria such as Streptococcus thermophilus and Lactobacillus bulgaricus, which have a general ability to enhance lactose digestion for individuals with lactose intolerance. Thus, individual strain identity is not crucial in this case.
      In vitro tests to screen potential probioticsThese tests provide knowledge of strains and probiotic mechanisms. Each of these tests will require in vivo validation. In vitro tests include bile acid resistance, resistance to gastric acidity, adherence to mucous or human epithelial cells and cell lines, antimicrobial activity against potential pathogens, ability to reduce pathogen adhesion, bile salt hydrolase activity, resistance to spermicides (for probiotics for vaginal use).
      Safety considerationsProof must be provided that a probiotic strain is safe and free of contamination in its delivery form.
      In vivo studies in animals and humansThe principal outcome of efficacy studies on probiotics must be proven benefits in human and animal trials.
      Health claims and labelingIn most countries, probiotic foods are allowed to display only general health claims. The group recommends that specific health claims be allowed in cases where sufficient scientific evidence is available to back up such a claim. This would also prevent misleading information on labels where the probiotic has a quite specific function and is advertised under a general umbrella term.
      Consumers' liking for probiotic functional foods lies more in the claimed health benefits than in the nutritional claims, and the former is linked to viability of the probiotic strains (
      • Verbeke W.
      • Scholderer J.
      • Lahteenmaki L.
      Consumer appeal of nutrition and health claims in three existing product concepts.
      ;
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ). Selection criteria for probiotic strains include safety, as well as technological, sensory, and functional properties of the strains (
      • Innocente N.
      • Biasutti M.
      • Rita F.
      • Brichese R.
      • Comi G.
      • Iacumin L.
      Effect of indigenous Lactobacillus rhamnosus isolated from bovine milk on microbiological characteristics and aromatic profile of traditional yogurt.
      ;
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ).
      In terms of safety, strains of Lactobacillus and Bifidobacterium have GRAS status and are the most studied genera included in foods (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ;
      • Ribeiro M.C.
      • Chaves K.S.
      • Gebara C.
      • Infante F.N.S.
      • Grosso C.R.F.
      • Gigante M.L.
      Effect of microencapsulation of Lactobacillus acidophilus LA-5 on physicochemical, sensory and microbiological characteristics of stirred probiotic yoghurt.
      ;
      • Tripathi M.K.
      • Giri S.K.
      Probiotic functional foods: Survival of probiotics during processing and storage.
      ;
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ). In Sweden and Finland, L. rhamnosus LGG is consumed in large amounts without resultant Lactobacillus bacteremia being reported. Neither was any negative effect found when LGG was fed to pregnant women and persons with human immunodeficiency virus (HIV;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ). Enterococcus, Lactococcus, Saccharomyces, and Pediococcus genera also are regarded as harboring potential probiotic species (
      • Tripathi M.K.
      • Giri S.K.
      Probiotic functional foods: Survival of probiotics during processing and storage.
      ).
      Appropriate probiotic cultures enable the processing of fermented products with the desired sensory attributes (texture, aroma, and flavor) because consumers' detection of sourness or bitterness, and off-flavors may influence the acceptance of the beverage (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ). Microencapsulated probiotic cells added to yogurt fermented by yogurt cultures may circumvent possible negative sensory attributes due to a probiotic strain (
      • Ribeiro M.C.
      • Chaves K.S.
      • Gebara C.
      • Infante F.N.S.
      • Grosso C.R.F.
      • Gigante M.L.
      Effect of microencapsulation of Lactobacillus acidophilus LA-5 on physicochemical, sensory and microbiological characteristics of stirred probiotic yoghurt.
      ;
      • Amakiri A.C.
      • Kalombo L.
      • Thantsha M.S.
      Lyophilised vegetal BM 297 ATO-Inulin lipid-based synbiotic microparticles containing Bifidobacterium longum LMG 13197: Design and characterisation.
      ;
      • Eratte D.
      • Dowling K.
      • Barrow C.J.
      • Adhikari B.
      Recent advances in the microencapsulation of omega-3 oil and probiotic bacteria through complex coecervation: A review.
      ).
      In terms of functional properties, species such as Lactobacillus acidophilus that are included in dairy products may contribute to a reduction in serum cholesterol, relief from lactose intolerance, and reduction of chances of developing colon cancer (
      • Zhang T.
      • Jeong C.H.
      • Cheng W.N.
      • Bae H.
      • Seo H.G.
      • Petriello M.C.
      • Han S.G.
      Moringa extract enhances the fermentative, textural, and bioactive properties of yoghurt.
      ). Antimicrobial metabolites (acids and bacteriocins) may contribute to biopreservation (inhibition of pathogens) and confer health benefits (
      • Abd El-Gawad I.A.
      • El-Sayed E.M.
      • El-Zeini H.M.
      • Hafez S.A.
      • Saleh F.A.
      Antibacterial activity of probiotic yoghurt and soy-yoghurt against Escherichia coli and Staphylococcus aureus.
      ;
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ;
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ).
      Technologically, probiotic inclusion in yogurt is challenging due to strain-specific viability difficulties during refrigerated storage (low pH and high acidity) and slow probiotic growth in milk due to inadequate proteolytic enzymes (
      • Marafon A.P.
      • Sumi A.
      • Alcȃntara M.R.
      • Tamime A.Y.
      • Nogueira de Oliveira M.
      Optimization of the rheological properties of probiotic yoghurts supplemented with milk proteins.
      ;
      • Innocente N.
      • Biasutti M.
      • Rita F.
      • Brichese R.
      • Comi G.
      • Iacumin L.
      Effect of indigenous Lactobacillus rhamnosus isolated from bovine milk on microbiological characteristics and aromatic profile of traditional yogurt.
      ). Interaction between microbial cultures in the product can affect the growth of the yogurt starter cultures and probiotic viability (
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      ). In particular, Streptococcus thermophilus (a starter culture) is reported to weaken the health-promoting potential of probiotic strains (
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      ). The detrimental effect on probiotic survival is also linked to sensitivity to ingredients added to yogurt and the conditions of processing and storage, including acidity, pH, temperature, oxygen levels, and other factors that affect survival of beneficial bacteria (
      • Jungersen M.
      • Wind A.
      • Johansen E.
      • Christensen J.E.
      • Stuer-Lauridsen B.
      • Eskesen D.
      The science behind the probiotic strain Bifidobacterium animalis subsp. lactis BB-12.
      ;
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      ).
      There is a plethora of studies that report positive results relating to growth and survival of probiotic strains in yogurt. In a study by
      • Illupapalayam V.V.
      • Smith S.C.
      • Gamlath S.
      Consumer acceptability and antioxidant potential of probiotic-yogurt with spices.
      , all yogurts spiced with cardamom, nutmeg, or cinnamon had probiotic strain LA5 counts in the range 5 × 107 to 108 cfu/g, whereas samples containing probiotic Bifidobacterium strain Bb12 had counts in the range of 106 to 107 cfu/g after 28 d of shelf life. In a study by
      • Innocente N.
      • Biasutti M.
      • Rita F.
      • Brichese R.
      • Comi G.
      • Iacumin L.
      Effect of indigenous Lactobacillus rhamnosus isolated from bovine milk on microbiological characteristics and aromatic profile of traditional yogurt.
      , the counts of the starter culture and probiotic L. rhamnosus DSA LR1 were maintained at above 7 log10 cfu/mL after 20 d of storage at 4°C. This was confirmed by the plating technique for lactic acid bacteria and PCR-denaturing gradient gel electrophoresis molecular technique (
      • Innocente N.
      • Biasutti M.
      • Rita F.
      • Brichese R.
      • Comi G.
      • Iacumin L.
      Effect of indigenous Lactobacillus rhamnosus isolated from bovine milk on microbiological characteristics and aromatic profile of traditional yogurt.
      ). The nonencapsulated and encapsulated probiotic strain L. acidophilus LA5 in yogurt had respective viability of 1.58 × 107 cfu/g and 1.12 × 107 cfu/g after 35 d of refrigerated storage (
      • Ribeiro M.C.
      • Chaves K.S.
      • Gebara C.
      • Infante F.N.S.
      • Grosso C.R.F.
      • Gigante M.L.
      Effect of microencapsulation of Lactobacillus acidophilus LA-5 on physicochemical, sensory and microbiological characteristics of stirred probiotic yoghurt.
      ). The presence of the probiotic strain did not affect the viability of the starter cultures, as the cell counts of L. bulgaricus and S. thermophilus were 7.99 × 106 cfu/g and 4.5 × 108 cfu/g, respectively, in the yogurt containing the nonencapsulated probiotic strain and 1.91 × 106 cfu/g and 6.92 × 108 cfu/g in the yogurt containing the encapsulated probiotic strain LA5 (
      • Ribeiro M.C.
      • Chaves K.S.
      • Gebara C.
      • Infante F.N.S.
      • Grosso C.R.F.
      • Gigante M.L.
      Effect of microencapsulation of Lactobacillus acidophilus LA-5 on physicochemical, sensory and microbiological characteristics of stirred probiotic yoghurt.
      ). Lactobacilli such as L. helveticus strains (R0052, LBK-16H, H9, CP790) are reported as being used as fermentation starter cultures or food additives (
      • Zhou T.
      • Huo R.
      • Kwok L.-Y.
      • Li C.
      • Ma Y.
      • Mi Z.
      • Chen Y.
      Effects of applying Lactobacillus helveticus H9 as adjunct starter culture in yogurt fermentation and storage.
      ) possibly due to their ability to maintain population levels above the recommended therapeutic minimum. Essentially, the foregoing studies' findings imply that viability or fate of probiotics in yogurt containing yogurt cultures is species and strain dependent in addition to factors such as additives or yogurt-recipe ingredients, processing conditions, time of storage, methods of enumerating probiotic cells, and expertise of the quality control workers in relation to employing selective and differential media (in the case of pour plate approaches).
      Lactobacillus rhamnosus is one of the most studied and used species in probiotic foods and supplements (
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). Arguably, L. rhamnosus LGG is the most thoroughly studied probiotic strain (
      • Segers M.E.
      • Lebeer S.
      Towards a better understanding of Lactobacillus rhamnosus GG-host interactions.
      ;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ;
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). Selection of strain LGG relates to its reported probiotic characteristics (bile resistance, resistance to gastric acid), ability to colonize the gut, inhibition of indicator pathogens, and stimulation of the immune system (
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). The L. rhamnosus strains produce lactic acid in relatively large amounts (
      • Beristain-Bauza S.C.
      • Mani-López E.
      • Palou E.
      • López-Malo A.
      Antimicrobial activity and physical properties of protein films added with cell-free supernatant of Lactobacillus rhamnosus..
      ). Hence, optimal growth of L. rhamnosus is influenced by the pH level, as its growth at pH 4.2 is considerably better than at pH 5 (
      • Mpofu A.
      • Linnemann A.R.
      • Sybesma W.
      • Kort R.
      • Nout M.J.R.
      • Smid E.J.
      Development of a locally sustainable functional food based on mutandabota, a traditional food in southern Africa.
      ,
      • Mpofu A.
      • Linnemann A.
      • Nout M.J.R.
      • Zwietering M.H.
      • Smid E.J.
      • den Besten H.M.W.
      Inactivation of bacterial pathogens in yoba mutandabota, a dairy product fermented with the probiotic Lactobacillus rhamnosus yoba.
      ;
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). When yogurt is used as the delivery vessel for L. rhamnosus, the viability of the probiotic is not affected as much as for other species (such as Bifidobacterium longum, Bifidobacterium bifidum, Lactobacillus casei, and L. acidophilus) that are more variably subdued by yogurt's low pH (
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). However, among the Bifidobacterium strains, Bifidobacterium animalis ssp. lactis BB-12 (the most documented) is technologically tolerant to oxygen, proliferates in milk through lactose metabolism (unlike most lactobacilli), maintains high viability during storage, and exhibits appreciable probiotic properties and health benefits, which reasonably enables manufacturers to subject it to worldwide marketing using yogurt and other dairy products as delivery vessels to the consumer (
      • Masco L.
      • Ventura M.
      • Zink R.
      • Huys G.
      • Swings J.
      Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis subsp. nov. and Bifidobacterium lactis as Bifidobacterium animalis subsp. lactis subsp. nov.
      ;
      • Jungersen M.
      • Wind A.
      • Johansen E.
      • Christensen J.E.
      • Stuer-Lauridsen B.
      • Eskesen D.
      The science behind the probiotic strain Bifidobacterium animalis subsp. lactis BB-12.
      ). Probiotics selected for addition into yogurt and other beverages need to be health promoting, technologically suitable, and compatible with yogurt cultures (
      • Bisanz J.E.
      • Macklaim J.M.
      • Gloor G.B.
      • Reid G.
      Bacterial metatranscriptome analysis of a probiotic yoghurt using an RNA-Seq approach.
      ;
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ;
      • Tripathi M.K.
      • Giri S.K.
      Probiotic functional foods: Survival of probiotics during processing and storage.
      ;
      • Innocente N.
      • Biasutti M.
      • Rita F.
      • Brichese R.
      • Comi G.
      • Iacumin L.
      Effect of indigenous Lactobacillus rhamnosus isolated from bovine milk on microbiological characteristics and aromatic profile of traditional yogurt.
      ).

      Reasons for Labeling Some Bacterial Species as Nonprobiotic

      Procedures and regulations stipulate the use of both S. thermophilus and L. bulgaricus as starter cultures in the production of yogurt due to their symbiotic relationship (
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ). Yogurt starter cultures, however, may not necessarily be regarded as probiotic because their inability to significantly resist bile and gastric acid conditions inhibits their viability and survival in the gastrointestinal tract. Nonetheless, yogurt cultures are able to improve lactose intolerance due to lactose fermentation in the milk (
      • Hekmat S.
      • Soltani H.
      • Reid G.
      Growth and survival of Lactobacillus reuteri RC-14 and Lactobacillus rhamnosus GR-1 in yogurt for use as a functional food.
      ). Yogurt cultures have also been shown to help strengthen the immune defense and reduce or prevent diarrhea (
      • Chandan R.C.
      • Gandhi A.
      • Shah N.P.
      Yoghurt: Historical background, health benefits and global trade.
      ). In relation to the aforementioned potential benefits, yogurt cultures could possibly be regarded as having probiotic characteristics (
      • Chandan R.C.
      • Gandhi A.
      • Shah N.P.
      Yoghurt: Historical background, health benefits and global trade.
      ).
      There are, however, conflicting reports that refute the probiotic potential of yogurt cultures, albeit they improve lactose digestion. It is important to note that yogurt cultures retaining confirmed high viability in the human gastrointestinal tract may not necessarily impart health benefits to the host (
      • Chandan R.C.
      • Gandhi A.
      • Shah N.P.
      Yoghurt: Historical background, health benefits and global trade.
      ). There needs to be an associated clinical effect as evidenced in clinical trials. Refuting the probiotic potential of yogurt cultures relates to some workers asserting that the yogurt starter cultures could not metabolize phenolic compounds in green tea, such as catechin, epigallocatechin gallate, epigallocatechin, catechin gallate, and epicatechin gallate (
      • Muniandy P.
      • Shori A.B.
      • Baba A.S.
      Influence of green, white and black tea addition on the antioxidant acidity of probiotic yogurt during refrigerated storage.
      ). This compared with the fact that some probiotic lactobacilli have been reported to metabolize phenolic compounds in food (
      • Muniandy P.
      • Shori A.B.
      • Baba A.S.
      Influence of green, white and black tea addition on the antioxidant acidity of probiotic yogurt during refrigerated storage.
      ).

      REGULATIONS AND RECOMMENDATIONS RELATING TO PROBIOTIC FOOD PREPARATIONS

      Safety of Probiotic Strains with the Potential for Inclusion in Yogurt

      Products regarded as probiotic may contain a single strain or multistrains (several strains of the same species or genus) of probiotic bacteria (
      • de Simone C.
      The unregulated probiotic market.
      ). According to
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      , Lactobacillus and Bifidobacterium species are arguably the most studied and have appeared in more than 1,265 and 625 clinical trials, respectively, since the 1950s. Given that most of the probiotic strains are obtained from fermented beverages that had been consumed for a historical period of time, such strains are GRAS by the European Food Safety Authority (EFSA) and the US Food and Drug Administration (FDA;
      • de Simone C.
      The unregulated probiotic market.
      ;
      • Kothari D.
      • Patel S.
      • Kim S.-K.
      Probiotic supplements might not be universally-effective and safe: A review.
      ). Central to safety evaluation of potential probiotic strains is the confirmation of taxonomic classification at species level, but also the whole-genome sequencing of the specific strain to analyze for antibiotic resistance genes with the need to establish whether observed resistance is intrinsic (nontransferable) or acquired (transferable;
      • Saarela M.H.
      Safety aspects of next generation probiotics.
      ;
      • Sotoudegan F.
      • Daniali M.
      • Hassani S.
      • Nikfar S.
      • Abdollahi M.
      Reappraisal of probiotics' safety in human.
      ). Enzymatic activities of potential probiotic strains, such as bile salt hydrolase (BSH) activity and hemolytic activity, also need to be assessed as stipulated by Saarela (2018). Moderate BSH may lower cholesterol levels in the blood by hydrolyzing the bile salts; however, hyper BSH activity was reported to potentially impair lipid metabolism and contribute to the accumulation of gall stones (
      • Bustos A.Y.
      • Saavedra L.
      • de Valdez G.F.
      • Raya R.R.
      • Taranto M.P.
      Relationship between bile salt hydrolase activity, changes in the internal pH and tolerance to bile acids in lactic acid bacteria.
      ;
      • Kothari D.
      • Patel S.
      • Kim S.-K.
      Probiotic supplements might not be universally-effective and safe: A review.
      ).
      Furthermore, in conducting safety evaluations, the following need to be considered: probiotic physiological functions, recipients' health status, mode of administering the probiotics (orally or vaginally), the form of administration (liquid or powder), and the probiotic strains involved (
      • de Simone C.
      The unregulated probiotic market.
      ;
      • Kothari D.
      • Patel S.
      • Kim S.-K.
      Probiotic supplements might not be universally-effective and safe: A review.
      ). There are 2 aspects linked to the safety of probiotics: the potential adverse effect of the probiotic strain and the potential infection or effects of toxins produced by contaminants in the probiotic beverage/foodstuff (
      • de Simone C.
      The unregulated probiotic market.
      ;
      • Sotoudegan F.
      • Daniali M.
      • Hassani S.
      • Nikfar S.
      • Abdollahi M.
      Reappraisal of probiotics' safety in human.
      ). Nonetheless, only a few reports have indicated cases of sepsis attributed to Lactobacillus strains and fatality linked to gastrointestinal mucormycosis of preterm infants associated with contamination of the beverage with mycotoxic molds (
      • Doern C.D.
      • Nguyen S.T.
      • Afolabi F.
      • Burnham C.A.D.
      Probiotic-associated aspiration pneumonia due to Lactobacillus rhamnosus..
      ;
      • de Simone C.
      The unregulated probiotic market.
      ;
      • Kothari D.
      • Patel S.
      • Kim S.-K.
      Probiotic supplements might not be universally-effective and safe: A review.
      ;
      • Sotoudegan F.
      • Daniali M.
      • Hassani S.
      • Nikfar S.
      • Abdollahi M.
      Reappraisal of probiotics' safety in human.
      ). Increased mortality risk was also reported in vulnerable patients suffering from acute pancreatitis following administration of multispecies probiotic products (
      • de Simone C.
      The unregulated probiotic market.
      ).
      It is therefore recommended that safety be taken seriously when administering probiotics to vulnerable groups (preterm neonates, infants, the elderly, hospitalized patients, or immunocompromised individuals;
      • Sotoudegan F.
      • Daniali M.
      • Hassani S.
      • Nikfar S.
      • Abdollahi M.
      Reappraisal of probiotics' safety in human.
      ), particularly in cases of HIV and in persons with diseased liver, inflammatory bowel syndrome, injured mucosa, or immune dysregulation (
      • de Simone C.
      The unregulated probiotic market.
      ;
      • Kothari D.
      • Patel S.
      • Kim S.-K.
      Probiotic supplements might not be universally-effective and safe: A review.
      ). Saccharomyces boulardii incorporated in probiotic products and administered to patients in some hospitals was linked to fungemia in very ill individuals or immunocompromised hospitalized persons (
      • Santino I.
      • Alari A.
      • Bono S.
      • Teti E.
      • Marangi M.
      • Bernardini A.
      • Magrini L.
      • Di Somma S.
      • Teggi A.
      Saccharomyces cerevisiae fungemia, a possible consequence of the treatment of Clostridium difficile colitis with a probioticum.
      ;
      • Kara I.
      • Yildirim F.
      • Özgen Ö.
      • Erganis S.
      • Aydoğdu M.
      • Dizbay M.
      • Gürsel G.
      • Kalkanci A.
      Saccharomyces cerevisiae fungemia after probiotic treatment in an intensive care unit patient.
      ;
      • Martin I.W.
      • Tonner R.
      • Trivedi J.
      • Miller H.
      • Lee R.
      • Liang X.
      • Rotello L.
      • Isenbergh E.
      • Anderson J.
      • Perl T.
      • Zhang S.X.
      Saccharomyces boulardii probiotic-associated fungemia: Questioning the safety of this preventive probiotic's use.
      ;
      • de Simone C.
      The unregulated probiotic market.
      ;
      • Kothari D.
      • Patel S.
      • Kim S.-K.
      Probiotic supplements might not be universally-effective and safe: A review.
      ).
      • de Simone C.
      The unregulated probiotic market.
      on the other hand reported that in HIV-infected persons receiving anti-retroviral treatment and administered with probiotic supplements did not experience any side effects. The patients in fact exhibited immuno-beneficial effects and improved gut epithelial barrier function. It would be more pragmatic, however, to assume that this outcome is not necessarily always applicable. It is important to note that in most of the cases in which probiotic strains were implicated in infections, the individuals involved were either immunocompromised or had serious underlying health challenges (
      • Santino I.
      • Alari A.
      • Bono S.
      • Teti E.
      • Marangi M.
      • Bernardini A.
      • Magrini L.
      • Di Somma S.
      • Teggi A.
      Saccharomyces cerevisiae fungemia, a possible consequence of the treatment of Clostridium difficile colitis with a probioticum.
      ;
      • Kara I.
      • Yildirim F.
      • Özgen Ö.
      • Erganis S.
      • Aydoğdu M.
      • Dizbay M.
      • Gürsel G.
      • Kalkanci A.
      Saccharomyces cerevisiae fungemia after probiotic treatment in an intensive care unit patient.
      ;
      • Martin I.W.
      • Tonner R.
      • Trivedi J.
      • Miller H.
      • Lee R.
      • Liang X.
      • Rotello L.
      • Isenbergh E.
      • Anderson J.
      • Perl T.
      • Zhang S.X.
      Saccharomyces boulardii probiotic-associated fungemia: Questioning the safety of this preventive probiotic's use.
      ).

      Probiotic Efficacy and Clinical Trials

      Enhancing probiotic numbers in the gut of the host is not sufficient to expect approval of a health claim (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ). Evidence of efficacy or clinical outcomes must be submitted to regulatory authorities. Reports indicate that probiotic health claims are based mostly on in vitro and in vivo animal models and less on clinical trials (
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). It is better, however, to not extrapolate in vitro and animal in vivo assessment outcomes to human outcomes. Probiotic efficacy needs to be investigated, confirmed, and approved in accordance with well-designed human clinical trials (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ;
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). Although this is expected to be the case, there is a shortage of clinical trials to assess the effectivity of probiotic dairy products (
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). Several workers observed that there are only a few reports relating to clinical trials, and those that are available may not be fully randomized, double-blind, placebo-controlled trials (Bogović Matijašić et al., 2016). Generally, the number of human clinical trials conducted thus far is not big enough, and those conducted may not be large enough to have scientifically acceptable statistical significance (
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). A good number of clinical trials are conducted using healthy participants, which makes confirmation of therapeutic effects difficult to infer (Bogović Matijašić et al., 2016). Hence, one of the challenges relating to confirming a health claim is the need to conduct randomized, double-blind, placebo-controlled clinical trials, which is an expensive (and time-consuming) exercise, before marketing of the functional product (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ).
      The EFSA has rejected all the health claims that were submitted by manufacturers due to lack of validity, inadequate characterization, unconvincing beneficial effect on nutrition and physiological improvement, lack of placebo and randomization in clinical trials, and absence of quality and scientific design for the trials (
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). In the United States, a clinical guide is available that provides important information relating to practical outcomes of clinical trials, and it gets updated regularly at http://usprobioticguide.com (
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). It is recommended to conduct 3 levels of clinical assessment: (1) randomized clinical trials, (2) controlled cohort or case control trials, and (3) systematic analysis and expert reports (
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ).

      Recommendations for Probiotic Preparations by the Regulatory Bodies

      According to the definition provided by the Food and Agriculture Organization of the United Nations and World Health Organization (
      • FAO/WHO (Food and Agriculture Organization of the United Nations/World Health Organization)
      Guidelines for the evaluation of probiotics in food. Report of a joint FAO/WHO working group on drafting guidelines for the evaluation of probiotics in food.
      ) and modified in 2013 by an expert panel (
      • Hill C.
      • Guarner F.
      • Reid G.
      • Gibson G.R.
      • Merenstein D.J.
      • Pot B.
      • Morelli L.
      • Canani R.B.
      • Flint H.J.
      • Salminen S.
      • Calder P.C.
      • Sanders M.E.
      The International Scientific Association for probiotics and prebiotics consensus statement on the scope and appropriate use of the term probiotic.
      ), the microorganisms incorporated into yogurt should be in abundance and of high viability (
      • WHO/FAO
      Codex alimentarius: Codex standards for fermented milks 243-2003.
      ;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ).
      The use of the word probiotic on product labels is restricted in some regions of the world. In the European Union (EU), using the word probiotic is understood to be a health claim, and its inclusion on the label requires health claim approval by the EFSA (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ). The EFSA does not permit the use of the word probiotic on the label of products containing GRAS strains (
      • de Simone C.
      The unregulated probiotic market.
      ). This is in contrast to the FDA stance, which does allow the use of the term probiotic (
      • de Simone C.
      The unregulated probiotic market.
      ), and several strains are considered safe for human intake by the FDA. However, in Canada and the United States, manufacturers need to provide clinical evidence for the probiotic strain in the product, and if the product contains multistrains, the clinical evidence should be for the entire combination and not an extrapolation of a part of it (
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). In Canada, the regulation requires the dairy product labeled as yogurt to declare the presence of the 2 characterized cultures (L. bulgaricus and S. thermophilus;
      • Chandan R.C.
      • Gandhi A.
      • Shah N.P.
      Yoghurt: Historical background, health benefits and global trade.
      ). The viability of a probiotic strain declared in a beverage should be a minimum level of 1.0 × 109 cfu per stated serving size of food maintained throughout product shelf life (https://www.canada.ca/en/health-canada/services/food-nutrition/food-labelling/health-claims/accepted-claims-about-nature-probiotic-microorganisms-food.html).
      Japan's Ministry of Health, Welfare and Labor formed the food for specified health uses (FOSHU) guidelines for functional foods in 1991 (Foligne et al., 2013;
      • Kumar H.
      • Salminen S.
      • Verhagen H.
      • Rowland I.
      • Heimbach J.
      • Bañares S.
      • Young T.
      • Nomoto K.
      • Lalonde M.
      Novel probiotics and prebiotics: Road to the market.
      ;
      • Iwatani S.
      • Yamamoto N.
      Functional food products in Japan: A review.
      ). Through use of FOSHU guidelines, foods and beverages that contain active ingredients bearing scientifically substantiated and confirmed proof of health claims are approved to bear the FOSHU tag on the product label (Foligne et al., 2013;
      • Kumar H.
      • Salminen S.
      • Verhagen H.
      • Rowland I.
      • Heimbach J.
      • Bañares S.
      • Young T.
      • Nomoto K.
      • Lalonde M.
      Novel probiotics and prebiotics: Road to the market.
      ). Unlike EFSA regulation, in Japan as long as the active ingredient was approved by the government, the label of the product in which the active ingredient is contained can bear the FOSHU tag (Foligne et al., 2013;
      • Kumar H.
      • Salminen S.
      • Verhagen H.
      • Rowland I.
      • Heimbach J.
      • Bañares S.
      • Young T.
      • Nomoto K.
      • Lalonde M.
      Novel probiotics and prebiotics: Road to the market.
      ). The EFSA requires a clinical trial to be conducted using the product containing the active ingredient, not the identity of the latter alone (Foligne et al., 2013).
      India does not seem to have an established regulatory authority for probiotic products (Foligne et al., 2013). Reportedly, India's Council of Medical Research did embark on the compilation of guidelines for assessing probiotic strains in products to infer potential efficacy of claims (Foligne et al., 2013).
      The Chinese State Food and Drug Administration stipulates requirements of human clinical trials and interventions similar to those of EFSA in the EU. However, China accepts animal model-based substantiated health claims if human clinical trial outcomes are still outstanding (
      • Foligné B.
      • Daniel C.
      • Pot B.
      Probiotics from research to market: The possibilities, risks and challenges.
      ).
      The Brazilian legislation with regard to yogurt requires the total viability count for lactic acid bacteria in traditional yogurt to be more than 7 log10 cfu/mL throughout the shelf life period (
      • Ribeiro M.C.
      • Chaves K.S.
      • Gebara C.
      • Infante F.N.S.
      • Grosso C.R.F.
      • Gigante M.L.
      Effect of microencapsulation of Lactobacillus acidophilus LA-5 on physicochemical, sensory and microbiological characteristics of stirred probiotic yoghurt.
      ). In Australia, ABT cultures are permitted in yogurt, in which case the main organisms are L. acidophilus, Bifidobacterium, and S. thermophilus (
      • Chandan R.C.
      • Gandhi A.
      • Shah N.P.
      Yoghurt: Historical background, health benefits and global trade.
      ).
      With regard to composition, the FDA in the United States also requires cultured milk to contain at least 3.25% milk fat, 8.25% milk solids-nonfat, and a titratable acidity of 0.5% expressed as lactic acid (
      • Kilara A.
      Regulatory aspects of yogurt.
      ). The regulation also allows fortification with vitamins A and D (
      • Kilara A.
      Regulatory aspects of yogurt.
      ). The US standards require the production of yogurt with yogurt starter cultures, and probiotic cultures may be added to yogurt (
      • Chandan R.C.
      • Gandhi A.
      • Shah N.P.
      Yoghurt: Historical background, health benefits and global trade.
      ). The US yogurt production regulations (

      US FDA (Food and Drug Administration). 2019. Code of Federal Regulations Title 21, Volume 2, Revised as of April 1, 2019. Chapter 1, Subchapter B Food for human consumption. Part 131 Milk and Cream, Subpart B: Requirements for specific standardized milk and cream. Section 131.200 Yogurt.

      ) describe yogurt as a dairy product processed using fermenting yogurt cultures (L. delbrueckii ssp. bulgaricus and S. thermophilus), although other lactic acid bacteria may also be incorporated into yogurt (
      • Kilara A.
      Regulatory aspects of yogurt.
      ).
      In South Africa, there are 2 regulations that relate to yogurt standards. The first regulation is provided by the Department of Health (DOH). According to the DOH, the use of the word probiotic on the yogurt product label is not permitted by the country's amended regulations relating to the labeling and advertising of foods [Foods, Cosmetics and Disinfectants Act, 1972 (Act No. 54 of 1972: R.429);

      South Africa Department of Health. 1972. Foods, Cosmetics and Disinfectants Act, 1972 (Act No. 54 of 1972): Regulations relating to the labelling and advertising of foods: Amendment. Government Notice, page 3, Gazette No. 37695.

      ]. A functional claim linked to microbiological content in yogurt can only be made if the yogurt culture comprises of L. delbrueckii ssp. bulgaricus and S. thermophilus. The regulation further states that the wording for the functional claim shall be as follows: “yogurt cultures improve lactose digestion in individuals who have difficulty in digesting lactose (milk sugar),” as long as the yogurt culture population level in the dairy yogurt is not less than 108 cfu/g (

      South Africa Department of Health. 1972. Foods, Cosmetics and Disinfectants Act, 1972 (Act No. 54 of 1972): Regulations relating to the labelling and advertising of foods: Amendment. Government Notice, page 3, Gazette No. 37695.

      ).
      The second regulation is by South Africa's Department of Agriculture (DOA); this regulation (R.260, ACT No. 119 of 1990;

      South Africa Department of Agriculture, Forestry and Fisheries. 2015. Agricultural Product Standards Act, 1990 (Act No. 119 of 1990: Regulation R.260 of 2015): Regulations relating to the classification, packing and marking of dairy products and imitation dairy products intended for sale in the republic of South Africa: Amendment. Government Notice, page 5, Gazette No. 38615.

      ) somewhat contradicts the DOH's regulation. According to DOA's regulation (R.260), which is an amendment of South Africa's Agricultural Product Standards Act, 1990 (ACT No. 119 of 1990;

      South Africa Department of Agriculture, Forestry and Fisheries. 2015. Agricultural Product Standards Act, 1990 (Act No. 119 of 1990: Regulation R.260 of 2015): Regulations relating to the classification, packing and marking of dairy products and imitation dairy products intended for sale in the republic of South Africa: Amendment. Government Notice, page 5, Gazette No. 38615.

      ), yogurt culture is defined as a culture consisting of L. delbrueckii ssp. bulgaricus and S. thermophilus or another similar culture used for the manufacture of the primary dairy product known as yogurt. The standard for yogurt and drinking yogurt (

      South Africa Department of Agriculture, Forestry and Fisheries. 2015. Agricultural Product Standards Act, 1990 (Act No. 119 of 1990: Regulation R.260 of 2015): Regulations relating to the classification, packing and marking of dairy products and imitation dairy products intended for sale in the republic of South Africa: Amendment. Government Notice, page 5, Gazette No. 38615.

      ) requires yogurt and drinking yogurt to contain at least 107 cfu/g of yogurt culture in a final product. The same standard also allows the addition of other specific microorganisms in yogurt (to supplement the yogurt culture), in which case, their presence in the product should be claimed on the label and their viability should be at least 107 cfu/mL for each specific microorganism (

      South Africa Department of Agriculture, Forestry and Fisheries. 2015. Agricultural Product Standards Act, 1990 (Act No. 119 of 1990: Regulation R.260 of 2015): Regulations relating to the classification, packing and marking of dairy products and imitation dairy products intended for sale in the republic of South Africa: Amendment. Government Notice, page 5, Gazette No. 38615.

      ). Although the taxonomic nomenclature for the additional specific microorganisms may be included on the yogurt product label, they are not permitted to be stated as probiotic.
      To summarize South Africa's regulations, R.429 does not permit the use of the word probiotic on the product label. The amended Agricultural Product Standards Act, 1990 (R.260, ACT No. 119 of 1990) permits the incorporation of specific probiotic strains in yogurt products as long as only their taxonomic nomenclature and minimum population levels are appended on the product label. Although DOH's regulation requires 108 cfu/g, the DOA's regulation stipulates 107 cfu/g for every species claimed on the yogurt product label. These contradictions require attention by the respective South African government departments.

      PREBIOTIC AND NONPREBIOTIC FUNCTIONAL INGREDIENTS IN PROBIOTIC YOGURT

      Prebiotic Ingredients with Potential for Inclusion in Yogurt

      The definition of a prebiotic has been modified to a substrate that is selectively utilized by host microorganisms conferring a health benefit. Substances such as polyphenols and polyunsaturated fatty acids converted to respective conjugated fatty acids might fit the updated definition, assuming convincing weight of evidence in the target host (
      • Gibson G.R.
      • Hutkins R.
      • Sanders M.E.
      • Prescott S.L.
      • Reimer R.A.
      • Salminen S.J.
      • Scott K.
      • Stanton C.
      • Swanson K.S.
      • Cani P.D.
      • Verbeke K.
      • Reid G.
      The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics.
      ). Generally, inulin, galactooligosaccharides, fructooligosaccharides, oligofructose, resistant starch, lactulose, and polydextrose are the major prebiotic ingredients that may be added to dairy products to stimulate growth or proliferation of fermenting beneficial bacteria during fermentation, refrigerated storage, and in the gut (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ;
      • Mousavi M.
      • Heshmati A.
      • Garmakhany A.D.
      • Vahidinia A.
      • Taheri M.
      Optimization of the viability of Lactobacillus acidophilus and physico-chemical, textural and sensorial characteristics of flaxseed-enriched stirred probiotic yogurt by using response surface methodology.
      ;
      • Sah B.N.P.
      • Vasiljevic T.
      • Mckechnie S.
      • Donkor O.N.
      Physicochemical, textural and rheological properties of probiotic yoghurt fortified with fibre-rich pineapple peel powder during refrigerated storage.
      ).
      Specific nuts, grains, and fruits, reported by several workers, may be added to yogurt as prebiotics but can potentially affect physicochemical parameters, texture, and rheology, and if not selected carefully, may negatively change the consumer acceptability of the yogurt during its refrigerated shelf life (
      • Januário J.G.B.
      • da Silva I.C.F.
      • de Oliveira A.S.
      • de Oliveira J.F.
      • Dionísio J.N.
      • Klososki S.J.
      • Pimentel T.C.
      Probiotic yoghurt flavored with organic beet with carrot, cassava, sweet potato or corn juice: Physicochemical and texture evaluation, probiotic viability and acceptance.
      ;
      • Mousavi M.
      • Heshmati A.
      • Garmakhany A.D.
      • Vahidinia A.
      • Taheri M.
      Optimization of the viability of Lactobacillus acidophilus and physico-chemical, textural and sensorial characteristics of flaxseed-enriched stirred probiotic yogurt by using response surface methodology.
      ;
      • Sah B.N.P.
      • Vasiljevic T.
      • Mckechnie S.
      • Donkor O.N.
      Antibacterial and antiproliferative peptides in synbiotic yoghurt-release and stability during refrigerated storage.
      ;
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      ;
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). It may be noted that growth and viability of specific probiotic strains in yogurt depend on the type and concentration of the prebiotic ingredient added to the yogurt (
      • Abd El-Gawad I.A.
      • El-Sayed E.M.
      • El-Zeini H.M.
      • Hafez S.A.
      • Saleh F.A.
      Antibacterial activity of probiotic yoghurt and soy-yoghurt against Escherichia coli and Staphylococcus aureus.
      ;
      • Baruzzi F.
      • de Candia S.
      • Qintieri L.
      • Caputo L.
      • De Leo F.
      Development of a synbiotic beverage enriched with bifidobacteria strains and fortified with whey proteins.
      ;
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      ;
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ;
      • Zhang T.
      • Jeong C.H.
      • Cheng W.N.
      • Bae H.
      • Seo H.G.
      • Petriello M.C.
      • Han S.G.
      Moringa extract enhances the fermentative, textural, and bioactive properties of yoghurt.
      ).

      Nonprebiotic Functional Ingredients with Potential for Inclusion in Yogurt

      Historically, yogurt consumption was linked to the belief that it improves health and well-being (
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ;
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). Yogurt's perceived potential health benefits to the consumer has led to the food industry's desire to innovate and market new yogurt products containing added so-called functional nonprebiotic ingredients (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ). Apart from proposing the current definition of prebiotic,
      • Bindels L.B.
      • Delzenne N.M.
      • Cani P.D.
      • Walter J.
      Towards a more comprehensive concept for prebiotics.
      further define prebiotic effect as the beneficial physiological outcome that arises from the modulation of the composition or activity of the gut microbiota through the metabolization of a nondigestible compound. Prebiotic effects may be realized from the nonprebiotic functional ingredients that may include probiotics, minerals, vitamins, fish oil, fibers, phytosterols (or stanols), omega-3 fatty acids, polyphenols, isoflavones, bioactive compounds, and hydrolyzed whey protein (
      • Champagne C.P.
      • Gomes da Cruz A.
      • Daga M.
      Strategies to improve the functionality of probiotics in supplements and foods.
      ;
      • Fazilah N.F.
      • Ariff A.B.
      • Khayat M.E.
      • Rios-Solis L.
      • Halim M.
      Influence of probiotics, prebiotics, synbiotics and bioactive phytochemicals on the formulation of functional yogurt.
      ;
      • Turkmen N.
      • Akal C.
      • Özer B.
      Probiotic dairy-based beverages: A review.
      ). Phytosterols (a phytonutrient) has cholesterol-reducing ability; isoflavones are strong antioxidants; CLA is anti-atherogenic, can depress total cholesterol, and inhibits the growth of some human cancer cell lines, as well as modulate the immune system and promote growth of the consumer (
      • Faihst T.-J.
      • Myburgh J.
      • Bothma C.
      • Hugo C.
      • Hugo A.
      Effect of conjugated linoleic acid supplementation on the microbial, physical, chemical and sensory properties of yoghurt.
      ;
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ). However, some nonprebiotic functional ingredients have technological challenges. For instance, omega-3 fatty acids are slightly fishy and sensitive to heat, air, and light, and phytosterols and isoflavones are hydrophobic, which makes them rather difficult to add to nonfat food matrices (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ).

      METHODS FOR ASSESSING VIABILITY OF CELLS AND BACTERIAL COUNTS OF MIXED PROBIOTIC STRAINS IN YOGURT AND FOR CHARACTERIZING THE COMPONENT STRAINS

      Probiotic beverages need to conform to safety, quality, and functional requirements (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ). First and foremost, the probiotic organisms in the product should have viable counts above the recommended therapeutic minimum stated on the label (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ). It is important to investigate the viability by employing suitable methods, as there have been reports of nonconformance to regulatory requirements (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ). The culture-dependent approach is one of the ways by which probiotic population levels may be enumerated.

      Use of Culture-Dependent Techniques to Investigate Bacterial Counts and Cell Viability of Probiotic Bacteria in Yogurt

      The period between fermentation and consumption may subject the probiotic cells to stress rendering them less functional albeit still viable (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ;
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ). The implication is that although the plate count method may reflect the magnitude of the population levels, it may not indicate the proportion of stressed cells present (Bogović Matijašić et al., 2016;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ). There is, nevertheless, potential for the viable but nonculturable (VBNC) or stressed probiotic cells to offer health benefits to the host (
      • Rodríguez-Nogales A.
      • Algieri E.
      • Vezza T.
      • Garrido-Mesa N.
      • Olivares M.
      • Comalada M.
      • Riccardi C.
      • Utrilla M.P.
      • Rodríguez-Cabezas M.E.
      • Galvez J.
      The viability of Lactobacillus fermentum CECT5716 is not essential to exert intestinal anti-inflammatory properties.
      ;
      • Sarkar S.
      Whether viable and dead probiotic are equally efficacious?.
      ). Culture-dependent techniques for assessing probiotic viability have challenges such as being laborious and time intensive, with an extended incubation period of 72 to 96 h in some cases (
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ). The other challenge during the enumeration of probiotics in yogurt is that there are only a few standardized differential or selective plate count methods. These include International Organization for Standardization (ISO) methods such as ISO 20128 (
      • ISO (International Organization for Standardization)
      Milk products – Enumeration of Lactobacillus acidophilus – Colony count technique at 43°C. ISO 20128:2002 (IDF 192:2002)..
      ) for L. acidophilus and ISO 29981 for Bifidobacterium (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ). This is linked to the fact that most of the probiotics incorporated into yogurt are closely related to the starter cultures that also belong to the lactic acid bacteria (LAB) group and have almost similar cultural and metabolic requirements (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ;
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ). This complicates the need to find suitable media to selectively grow and differentiate closely related probiotic strains present in combination in the same product and at the same time inhibit the yogurt starter cultures (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Hill D.
      • Ross R.
      • Arendt E.
      • Stanton C.
      Microbiology of yogurt and bio-yogurts containing probiotics and prebiotics. In Yoghurt in Health and Disease Prevention. N. P. Shah..
      ;
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ). On the other hand, the starter cultures can potentially outgrow the probiotic strains. Therefore, the plate count technique, which is a culture-dependent method, has to be employed sensibly, using the right media and conditions during the enumeration of probiotics included in yogurt. Table 4 presents a summary of the selective media and conditions used for the enumeration of probiotic strains in commercial yogurt. The probiotics belonging to the genus Lactobacillus can be enumerated on De Man, Rogosa and Sharpe (MRS) medium whereas S. thermophilus and L. bulgaricus, which make up the main yogurt cultures, can be enumerated on M17 medium at a pH of 6.8 (
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ). As shown in Table 4, a range of additives can be added to these media to render them more selective. It appears, from Table 4, that there is a need for the amount of added ingredients and conditions of analysis to be standardized.
      Table 4Summary of the selective media and conditions used for the enumeration of probiotic strain in commercial yogurt (adapted from
      • Gebara C.
      • Ribeiro M.C.E.
      • Chaves K.S.
      • Gandara A.L.N.
      • Gigante M.L.
      Effectiveness of different methodologies for the selective enumeration of Lactobacillus acidophilus La5 from yoghurt and Prato cheese.
      )
      Medium base
      MRS = De Man, Rogosa and Sharpe medium; RCA = reinforced clostridial agar.
      Selective ingredientpH of mediumMicrobial diversitySpecies enumeratedIncubation conditionsReferences
      MRS agarBileLactobacillus acidophilus; Streptococcus thermophilus; Lactobacillus bulgaricusL. acidophilus37°C, 72 h, anaerobic incubation; 37°C, 72 h, aerobic incubation
      • IDF (International Dairy Federation)
      Fermented and non-fermented milk products – detection and enumeration of Lactobacillus acidophilus – culture media.
      ;
      • Ribeiro M.C.
      • Chaves K.S.
      • Gebara C.
      • Infante F.N.S.
      • Grosso C.R.F.
      • Gigante M.L.
      Effect of microencapsulation of Lactobacillus acidophilus LA-5 on physicochemical, sensory and microbiological characteristics of stirred probiotic yoghurt.
      ;
      • Antunes A.E.C.
      • Cazetto T.F.
      • Bolini H.M.A.
      Viability of probiotic microorganisms during storage, postacidification and sensory analysis of fat-free yogurts with added whey protein concentrate.
      ;
      • ISO. (International Organization for Standardization)
      ISO 20128:2006 [IDF 192:2006]. Milk products—Enumeration of presumptive Lactobacillus acidophilus on a selective medium—Colony-count technique at 37 degrees C..
      MRS agarSorbitolL. acidophilus; S. thermophilus; L. bulgaricusL. acidophilus37°C, 72 h, anaerobic incubation; 37°C, 48 h, anaerobic incubation
      • Tharmaraj N.
      • Shah N.P.
      Selective enumeration of Lactobacillus delbrueckii ssp. bulgaricus, Streptococcus thermophilus, Lactobacillus acidophilus, bifidobacteria, Lactobacillus casei, Lactobacillus rhamnosus and propionibacteria.
      ;
      • Donkor O.N.
      • Henriksson A.
      • Vasiljevic T.
      • Shah N.P.
      Effect of acidification on the activity of probiotics in yoghurt during cold storage.
      MRS agarClindamycinL. acidophilus; S. thermophilus; L. bulgaricusL. acidophilus37°C, 72 h, anaerobic incubation;
      • Espírito-Santo A.P.
      • Perego P.
      • Converti A.
      • Oliveira M.N.
      Influence of milk type and addition of passion fruit peel powder on fermentation kinetics, texture profile and bacterial viability in probiotic yoghurt.
      ;
      • Saccaro D.M.
      • Hirota C.Y.
      • Tamime A.Y.
      • Oliveira M.N.
      Evaluation of different selective media for enumeration of probiotic microorganisms in combination with yoghurt starter cultures in fermented milk.
      MRS agar1.5% bile Soln (10% wt/vol)L. acidophilus; S. thermophilus; L. bulgaricusL. acidophilus37°C, 72 h, anaerobic incubation;
      • Gebara C.
      • Ribeiro M.C.E.
      • Chaves K.S.
      • Gandara A.L.N.
      • Gigante M.L.
      Effectiveness of different methodologies for the selective enumeration of Lactobacillus acidophilus La5 from yoghurt and Prato cheese.
      MRS agar0.5 ppm clindamycinL. acidophilus; S. thermophilus; L. bulgaricusL. acidophilus37°C, 72 h, anaerobic incubation;
      • Gebara C.
      • Ribeiro M.C.E.
      • Chaves K.S.
      • Gandara A.L.N.
      • Gigante M.L.
      Effectiveness of different methodologies for the selective enumeration of Lactobacillus acidophilus La5 from yoghurt and Prato cheese.
      RCApH 5.3L. acidophilus; S. thermophilus; L. bulgaricusL. bulgaricus45°C, 72 h anaerobic incubation
      • Gebara C.
      • Ribeiro M.C.E.
      • Chaves K.S.
      • Gandara A.L.N.
      • Gigante M.L.
      Effectiveness of different methodologies for the selective enumeration of Lactobacillus acidophilus La5 from yoghurt and Prato cheese.
      ST agarL. acidophilus; S. thermophilus; L. bulgaricusS. thermophilus30°C, 72 h, aerobic incubation
      • Gebara C.
      • Ribeiro M.C.E.
      • Chaves K.S.
      • Gandara A.L.N.
      • Gigante M.L.
      Effectiveness of different methodologies for the selective enumeration of Lactobacillus acidophilus La5 from yoghurt and Prato cheese.
      M17 agarL. acidophilus; S. thermophilus; L. bulgaricusS. thermophilus45°C, 72 h anaerobic incubation
      • Gebara C.
      • Ribeiro M.C.E.
      • Chaves K.S.
      • Gandara A.L.N.
      • Gigante M.L.
      Effectiveness of different methodologies for the selective enumeration of Lactobacillus acidophilus La5 from yoghurt and Prato cheese.
      V-MRS agar1% vancomycinLactobacillus casei; S. thermophilus; L. bulgaricusL. casei ATCC39337°C, 72 h aerobic incubation
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      MRS agarpH 5.2Same as aboveL. bulgaricus45°C, 72 h anaerobic incubation
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      M17 agar1% lactoseSame as aboveS. thermophilus45°C, 72 h anaerobic incubation
      • Terpou A.
      • Bekatorou A.
      • Kanellaki M.
      • Koutinas A.A.
      • Nigam P.
      Enhanced probiotic viability and aromatic profile of yogurts producedusing wheat bran (Triticum aestivum) as cell immobilization carrier.
      MRS-LP agar0.5 g/L lithium chloride; 0.75 g/L sodium propionateBifidobacterium longum; S. thermophilus; L. bulgaricusB. longum BI 0537°C, 72 h aerobic incubation
      • Cruz A.G.
      • Castro W.F.
      • Faria J.A.F.
      • Bogusz Jr, S.
      • Granato D.
      • Celeguini R.M.S.
      • Lima-Pallone J.
      • Godoy H.T.
      Glucose oxidase: A potential option to decrease the oxidative stress in stirred probiotic yoghurt.
      MRS agarpH 5.2Same as aboveL. bulgaricus LB 34045°C, 72 h anaerobic incubation
      • Cruz A.G.
      • Castro W.F.
      • Faria J.A.F.
      • Bogusz Jr, S.
      • Granato D.
      • Celeguini R.M.S.
      • Lima-Pallone J.
      • Godoy H.T.
      Glucose oxidase: A potential option to decrease the oxidative stress in stirred probiotic yoghurt.
      M17 agarSame as aboveS. thermophilus TA 04037°C, 48 h aerobic incubation
      • Cruz A.G.
      • Castro W.F.
      • Faria J.A.F.
      • Bogusz Jr, S.
      • Granato D.
      • Celeguini R.M.S.
      • Lima-Pallone J.
      • Godoy H.T.
      Glucose oxidase: A potential option to decrease the oxidative stress in stirred probiotic yoghurt.
      M17 agar0.5% lactoseS. thermophilus; L. acidophilus; B. longumS. thermophilus37°C, 48 h aerobic incubation
      • Zhang T.
      • Jeong C.H.
      • Cheng W.N.
      • Bae H.
      • Seo H.G.
      • Petriello M.C.
      • Han S.G.
      Moringa extract enhances the fermentative, textural, and bioactive properties of yoghurt.
      MRS agar0.15% bile salts (0.1g/mL)Same as aboveL. acidophilus37°C, 48 h aerobic incubation
      • Zhang T.
      • Jeong C.H.
      • Cheng W.N.
      • Bae H.
      • Seo H.G.
      • Petriello M.C.
      • Han S.G.
      Moringa extract enhances the fermentative, textural, and bioactive properties of yoghurt.
      MRS-LP agar0.3% lithium chloride; 0.05% l-cysteine hydrochloride (0.1 g/mL); 0.9% sodium propionateSame as aboveB. longum37°C, 48 h anerobic incubation
      • Zhang T.
      • Jeong C.H.
      • Cheng W.N.
      • Bae H.
      • Seo H.G.
      • Petriello M.C.
      • Han S.G.
      Moringa extract enhances the fermentative, textural, and bioactive properties of yoghurt.
      RCA1 μL/mL dicloxacillin (pH 7.1) and 0.3 g/100 g of anilineBifidobacterium animalis subsp. lactis; S. thermophilus; L. bulgaricusB. animalis subsp. lactis37°C, 72 h anaerobic incubation
      • Marafon A.P.
      • Sumi A.
      • Alcȃntara M.R.
      • Tamime A.Y.
      • Nogueira de Oliveira M.
      Optimization of the rheological properties of probiotic yoghurts supplemented with milk proteins.
      M17 agarSame as aboveS. thermophilus37°C, 48 h aerobic incubation
      • Marafon A.P.
      • Sumi A.
      • Alcȃntara M.R.
      • Tamime A.Y.
      • Nogueira de Oliveira M.
      Optimization of the rheological properties of probiotic yoghurts supplemented with milk proteins.
      MRS agarAcetic acidpH 5.4Same as aboveL. bulgaricus37°C, 48 h aerobic incubation
      • Marafon A.P.
      • Sumi A.
      • Alcȃntara M.R.
      • Tamime A.Y.
      • Nogueira de Oliveira M.
      Optimization of the rheological properties of probiotic yoghurts supplemented with milk proteins.
      1 MRS = De Man, Rogosa and Sharpe medium; RCA = reinforced clostridial agar.
      It was reported that MRS agar at pH 5.2 or clostridial agar at pH 5.3 can select for the growth of L. bulgaricus (white, rough, and irregular colonies that are 1.0 mm in diameter) just as S. thermophilus agar can select for S. thermophilus colonies (round, yellowish, and 0.1 to 0.5 mm in diameter) (
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ). Culture-dependent approaches, however, are not without challenges. Although selective media or set of techniques to enumerate some Lactobacillus probiotic strains is available, it may not be applicable to all strains of the same species (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ). There are almost no differential media for enumerating and differentiating species belonging to the genus Bifidobacterium (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Vinderola G.
      • Reinheimer J.
      • Salminen S.
      The enumeration of probiotic issues: From unavailable standardised culture media to a recommended procedure?.
      ), which complicates content claims of more than one species in a food beverage. The use of selective differential media, to some extent, relies on subjective decisions that require tried and tested skills to provide unquestionable conclusions relating to cell viability. Fortunately, there are developments and advances in the field of culture-dependent approaches for the enumeration of probiotic strains in food products. Further reading about mupirocin-based media for possible selective enumeration of bifidobacteria is recommended in the following references (
      • Rada V.
      • Koc J.
      The use of mupirocin for selective enumeration of bifidobacteria in fermented milk products.
      ;
      • Miranda R.O.
      • De Carvalho A.F.
      • Nero L.A.
      Development of a selective culture medium for bifidobacteria, raffinose-propionate lithium mupirocin (RP-MUP) and assessment of its usage with petrifilmTM aerobic count plates.
      ;
      • Vlkova E.
      • Salmonova H.
      • Bunešová V.
      • Geigerová M.
      • Rada V.
      • Musilová Ś.
      A new medium containing mupirocin, acetic acid, and norfloxacin for the selective cultivation of bifidobacterial.
      ).

      Flow Cytometry in the Enumeration of Probiotic Cells in Yogurt

      Flow cytometry (FC) is one of the cell-sorting quantitative methods. It allows simultaneous evaluation of the physicochemical characteristics of cells or particles (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Raymond Y.
      • Champagne C.P.
      The use of flow cytometry to accurately ascertain total and viable counts of Lactobacillus rhamnosus in chocolate.
      ;
      • Wilkinson M.G.
      Flow cytometry as a potential method of measuring bacterial viability in probiotic products: A review.
      ). This method employs the application of fluorescent dyes to cell components, which then assists with identifying the physiological characteristics of live cells, such as membrane integrity, cytoplasmic pH, intracellular enzyme activity, and membrane potential, which when combined reflect the degree of viability (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Raymond Y.
      • Champagne C.P.
      The use of flow cytometry to accurately ascertain total and viable counts of Lactobacillus rhamnosus in chocolate.
      ;
      • Wilkinson M.G.
      Flow cytometry as a potential method of measuring bacterial viability in probiotic products: A review.
      ). Investigators may use FC to enumerate cells of probiotics in food products and detect contaminants (
      • Raymond Y.
      • Champagne C.P.
      The use of flow cytometry to accurately ascertain total and viable counts of Lactobacillus rhamnosus in chocolate.
      ). Flow cytometry was successfully used to enumerate total cells (FCT) and viable cells (FCV) of L. rhamnosus R0011 in chocolate. Flow cytometry could be used to establish dead cells by differentiating between FCT and FCV counts; the FCV was close to double the counts obtained in the form of colony-forming units (
      • Raymond Y.
      • Champagne C.P.
      The use of flow cytometry to accurately ascertain total and viable counts of Lactobacillus rhamnosus in chocolate.
      ). A FC-based species-specific analytical method that employed a polyclonal antibody against the target species enabled rapid enumeration of Bifidobacterium lactis in 4 probiotic dairy products in 2 h compared with 72 h by the ISO standard plate method (
      • Geng J.
      • Chiron C.
      • Combrisson J.
      Rapid and specific enumeration of viable Bifidobacterium in dairy products based on flow cytometry technology: A proof of concept study.
      ). The difficulty with employing FC in enumerating microbial cells in yogurt and other foods relates to the presence of food particles, which can potentially affect the analyses (
      • Raymond Y.
      • Champagne C.P.
      The use of flow cytometry to accurately ascertain total and viable counts of Lactobacillus rhamnosus in chocolate.
      ). The FC needs careful selection of viability-staining dyes and specific antibody labeling to distinguish probiotic cells from the starter culture cells in yogurt (
      • Wilkinson M.G.
      Flow cytometry as a potential method of measuring bacterial viability in probiotic products: A review.
      ).

      Culture-Independent (Molecular) Approaches for Investigating Viable Probiotic Cells in Yogurt

      Enumeration of Probiotic Strains Based on PCR.

      These approaches employ the PCR, reverse transcriptase PCR (RT-PCR), and real-time quantitative PCR (RT-qPCR or qPCR). The PCR technique may be used to confirm probiotic viability with the assumption that only DNA of good integrity from nondamaged viable cells gets amplified (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      ). It may be noted, however, that good integrity DNA may not imply cell viability (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ).
      The RT-PCR is a variant of PCR that allows a sequence to be amplified severally through RNA transcription to form DNA enabled by the reverse transcriptase enzyme (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ). In this case, the probiotic cell viability assumption is based on the fact that the mRNA marker is of very brief half-life and hence, for dead cells, transcription would not happen, and no targeted-sequence amplification would be observed (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      ). Successful mRNA transcription may better imply cell viability, however, ribosomal RNA (rRNA) can also confirm cell viability (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ).
      The RT-qPCR or qPCR technique entails DNA amplification that employs fluorescent reporter dye to enable amplification, coupled with detection steps of the PCR reaction at the same time in a single-tube format (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ). This qPCR technique enables quantification of microbes in the sample through measurement of abundance of the target DNA sequence in the DNA template from a food sample (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ). The qPCR method has the difficulty of distinguishing between DNA from live and dead cells in yogurt products (
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ). Because health claims are linked to probiotic strain viability, limitations of the culture-dependent approach may be coupled with molecular techniques to retrieve additional information.

      The Use of Ethidium Monoazide-PCR and Propidium Monoazide-PCR.

      These 2 techniques tend to limit detection to viable cells and hence may be termed viability PCR (vPCR;
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ). The principle is that although the EMA dye penetrates and intercalates with DNA of cells with injured or compromised membranes, the intact cells remain dye-free (
      • Fittipaldi M.
      • Nocker A.
      • Codony F.
      Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification.
      ;
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      ;
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ). Hence, when genomic DNA isolation is done after treating with EMA dye, the dye-linked DNA will not be adequately amplified, although the EMA-free DNA can be sufficiently amplified when qPCR is employed (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Wilkinson M.G.
      Flow cytometry as a potential method of measuring bacterial viability in probiotic products: A review.
      ;
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ). In this case, the presence of cells having compromised membranes but still being metabolically active will result in lower log10 units compared with the control, pointing to a decline in viability (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ). The challenge is the possibility for some intact viable cells to imbibe the EMA dye.
      The PMA-PCR technique which employs a similar principle to the EMA-PCR was developed to counter the possibility of intact cells absorbing the Ethidium monoazide dye (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ;
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      ;
      • Wilkinson M.G.
      Flow cytometry as a potential method of measuring bacterial viability in probiotic products: A review.
      ). The propidium monoazide dye may not affect or intercalate living cells; however, at high concentrations, cell viability may decline (
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      ). The PMA-PCR technique can illustrate a trend in the death of cells that may be due to processing or storage conditions of the food beverage (
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      ). The propidium monoazide can be limited to detecting cells with uncompromised membranes when it is coupled with gel electrophoresis (
      • Fittipaldi M.
      • Nocker A.
      • Codony F.
      Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification.
      ;
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      ;
      • Laidlaw A.M.
      • Gänzle M.G.
      • Yang X.
      Comparative assessment of qPCR enumeration methods that discriminate between live and dead Escherichia coli 0157:H7 on beef.
      ).
      • Shao Y.
      • Wang Z.
      • Bao Q.
      • Zhang H.
      Application of propidium monoazide quantitative real-time PCR to quantify the viability of Lactobacillus delbrueckii ssp. bulgaricus..
      illustrated that PMA-qPCR could differentiate living cells of L. delbrueckii ssp. bulgaricus strain ND02 from the dead cells. The challenge with PMA-PCR arises when handling opaque products such as yogurt, but this can be avoided by applying a trigger instead of light to induce DNA-PMA intercalation or through manipulation of pH and temperature to change turbidity (
      • Davis C.
      Enumeration of probiotic strains: Review of culture-dependent and alternative techniques to quantify viable bacteria.
      ).

      Advanced Molecular Approaches for Analyzing Probiotic Preparations.

      Developing trends are the advanced culture-independent, high-throughput, sequencing-based microbial analyses that are coupled with bioinformatics and metabolomics in investigating diversity and relative microbial abundance within multispecies-containing beverages (
      • Morovic W.
      • Hibberd A.A.
      • Zabel B.
      • Barrangou R.
      • Stahl B.
      Genotyping by PCR and high-throughput sequencing of commercial probiotic products reveals composition biases.
      ;
      • Patro J.N.
      • Ramachandran P.
      • Barnaba T.
      • Mammel M.K.
      • Lewis J.L.
      • Elkins C.A.
      Culture-independent metagenomic surveillance of commercially available probiotics with high-throughput next-generation sequencing.
      ;
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ). These approaches are employed to determine microbial diversity and abundance (respectively, identity and viability of species) in probiotic beverages and the human gut and to determine the probiotics' effect on gut microbiota (
      • Veiga P.
      • Pons N.
      • Agrawal A.
      • Oozeer R.
      • Guyonnet D.
      • Brazeilles R.
      • Faurie J.-M.
      • van Hylckama Vlieg J.E.T.
      • Houghton L.A.
      • Whorwell P.J.
      • Ehrlich S.D.
      • Kennedy S.P.
      Changes of the human gut microbiome induced by a fermented milk product.
      ; Bogović Matijašić et al., 2016;
      • Patro J.N.
      • Ramachandran P.
      • Barnaba T.
      • Mammel M.K.
      • Lewis J.L.
      • Elkins C.A.
      Culture-independent metagenomic surveillance of commercially available probiotics with high-throughput next-generation sequencing.
      ;
      • Lugli G.A.
      • Mangifesta M.
      • Mancabelli L.
      • Milani C.
      • Turroni F.
      • Viappiani A.
      • van Sinderen D.
      • Ventura M.
      Compositional assessment of bacterial communities in probiotic supplements by means of metagenomic techniques.
      ). The next-generation sequencing (NGS) technologies including Illumina and Ion torrent (Thermo Fisher Scientific, Johannesburg, South Africa) are the most applied technologies in metagenomics analysis; and the others are Pacific Biosciences (Menlo Park, CA) single-molecule real-time sequencing, 454 pyrosequencing, and SOLiD (Applied Biosystems, Johannesburg, South Africa;
      • Chen C.-Y.
      • Yan X.
      • Wang S.
      • Jackson C.R.
      Application of metagenomic technologies for antimicrobial resistance and food safety research and beyond.
      ). The NGS approaches include 16S rRNA amplicon sequencing, 16S rDNA phylogenetic microarray, and metagenomics sequencing (Bogović Matijašić et al., 2016;
      • Morovic W.
      • Hibberd A.A.
      • Zabel B.
      • Barrangou R.
      • Stahl B.
      Genotyping by PCR and high-throughput sequencing of commercial probiotic products reveals composition biases.
      ;
      • Lugli G.A.
      • Mangifesta M.
      • Mancabelli L.
      • Milani C.
      • Turroni F.
      • Viappiani A.
      • van Sinderen D.
      • Ventura M.
      Compositional assessment of bacterial communities in probiotic supplements by means of metagenomic techniques.
      ).
      It is important to note that NGS approaches may not enable accurate quantification of the total viable probiotic population or the physiological state of the bacterial cells in the product which is critical for the host to derive potential benefits (Bogović Matijašić et al., 2016;
      • Patro J.N.
      • Ramachandran P.
      • Barnaba T.
      • Mammel M.K.
      • Lewis J.L.
      • Elkins C.A.
      Culture-independent metagenomic surveillance of commercially available probiotics with high-throughput next-generation sequencing.
      ). It is therefore recommended to consider combining molecular high-throughput techniques with quantitative PCR and random amplified polymorphic DNA-PCR analyses for determining cultivable targeted probiotics in product samples (
      • Bogovič Matijašić B.
      • Obermajer T.
      • Lipoglavšek L.
      • Sernel T.
      • Locatelli I.
      • Kos M.
      • Šmid A.
      • Rogelj I.
      Effects of synbiotic fermented milk containing Lactobacillus acidophilus La-5 and Bifidobacterium animalis ssp. lactis BB-12 on the fecal microbiota of adults with irritable bowel syndrome: A randomized double-blind, placebo-controlled trial.
      ). Although the NGS approaches are quick and can provide results speedily, the cost of the equipment and the bioinformatics and technical expertise needed to employ the right analytical software and to analyze the metagenomics data (to make sound conclusions) may be impediments to employing the more advanced culture-independent technologies.

      STUDIES EVALUATING EFFECTIVITY OF PROBIOTIC YOGURT IN TERMS OF HEALTH BENEFITS

      The potential health benefits of probiotics can be assessed in in vitro and in vivo human clinical trials referred to as random, placebo-controlled trials (
      • Aryana K.J.
      • Olson D.W.
      A 100-year review: Yoghurt and other cultured dairy products.
      ).

      Outcome of Selected In Vitro Investigations

      The health-promoting potential of probiotic strains has led to their consideration and inclusion into dairy products such as yogurt (
      • Iglesias M.B.
      • Viñas I.
      • Colás-Medà P.
      • Collazo C.
      • Serrano J.C.E.
      • Abadias M.
      Adhesion and invasion of Listeria monocytogenes and interaction with Lactobacillus rhamnosus GG after habituation on fresh-cut pear.
      ). The major antimicrobial activity of probiotics is attributed to release of hydrogen peroxide, organic acids and peptides, or bacteriocins (
      • Beristain-Bauza S.C.
      • Mani-López E.
      • Palou E.
      • López-Malo A.
      Antimicrobial activity and physical properties of protein films added with cell-free supernatant of Lactobacillus rhamnosus..
      ;
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). In a study by
      • Abd El-Gawad I.A.
      • El-Sayed E.M.
      • El-Zeini H.M.
      • Hafez S.A.
      • Saleh F.A.
      Antibacterial activity of probiotic yoghurt and soy-yoghurt against Escherichia coli and Staphylococcus aureus.
      , probiotic yogurt and soy yogurt was observed to inhibit Escherichia coli and Staphylococcus aureus during refrigerated storage largely linked to the presence of probiotic strains B. lactis Bb12 and B. longum Bb46 in these yogurts. Table 5 presents in vitro investigations of effectivity of probiotics against pathogens.
      Table 5In vitro studies that investigated effectiveness of probiotic strains against indicator pathogens
      Type of study or aimTechnique employedIndicator pathogenProbiotic strainOutcomeReference
      Investigate the antibacterial activity of probiotic and soy yogurt against pathogens during 15-d refrigerated storageYogurt milk and soy milk inoculated with Escherichia coli or Staphylococcus aureus after starter culture additionE. coli, Staph. aureusBifidobacterium lactis Bb12, Bifidobacterium longum Bb46Probiotic and soy yogurt can control pathogenic microbes
      • Abd El-Gawad I.A.
      • El-Sayed E.M.
      • El-Zeini H.M.
      • Hafez S.A.
      • Saleh F.A.
      Antibacterial activity of probiotic yoghurt and soy-yoghurt against Escherichia coli and Staphylococcus aureus.
      Investigate inhibitory peptides in yogurt against pathogenic bacteria and HT29 human cancer cells during 28-d storageWater-soluble crude peptide extracts preparation by high-speed centrifugation of probiotic yogurtsE. coli, Staph. aureusLactobacillus acidophilus ATCC 4356, Lactobacillus casei ATCC 393, and Lactobacillus paracasei ssp. paracasei ATCC BAA52Crude water-soluble peptide extracts of the probiotic yogurt had stronger inhibitory activities against pathogens and cancer cells than controlsSah et al. (2015)
      Assess anti-colon cancer and antioxidant activity of milk fermented by Lactobacillus helveticus strainsDPPH scavenging activity and colon cancer HT-29 cell line inhibitionColon HT-29 cancer cell lineL. helveticus strains ASCC953, ASCC474, ASCC1188, and ASCC1315Soluble extracts from milk fermented by L. helveticus 474 showed a decline in the extent of proteolysis of the extract after 24 h as measured by the OPA (o-phthaldialdehyde) method. Anti-colon cancer activity on HT-29 cell line was (19.03–50.98% growth inhibition) at 12 h of fermentation and declined to 5.4–9.94% at 24 h of fermentation in a time- and strain-dependent manner. No effect on normal colon cells T4056.Elfahri et al. (2015)
      Determine the capability of using Lactobacillus rhamnosus as a food bio-controlling agent against certain foodborne pathogensIn vitro (agar well diffusion assay) and food model (yogurt)E. coli O157:H7, Staph. aureus, Yersinia enterocolitica and Salmonella typhimuriumL. rhamnosus strainAcidified L. rhamnosus cell-free supernatant inhibited all pathogens tested. Lactobacillus rhamnosus eliminated or reduced pathogens spiked in yogurt.
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      In a food model, yogurt spiked with individual pathogens (Staphylococcus aureus, E. coli O157:H7, Salmonella typhi, and Yersinia enterocolitica) and cocultured with a L. rhamnosus strain, led to the complete elimination or large-scale reduction of the pathogens depending on the time of incubation and initial pathogen count (
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      ). The workers observed that of the 2 and 4 log10 cfu/mL inoculation levels of the pathogen, the former (lower) count was cleared faster.
      Probiotic strains release metabolites such as hydrogen peroxide, organic acids to lower pH, and bacteriocins, which synergistically may inhibit pathogens (
      • Abd El-Gawad I.A.
      • El-Sayed E.M.
      • El-Zeini H.M.
      • Hafez S.A.
      • Saleh F.A.
      Antibacterial activity of probiotic yoghurt and soy-yoghurt against Escherichia coli and Staphylococcus aureus.
      ).
      • Kamal R.M.
      • Alnakip M.E.
      • Abd El Aal S.F.
      • Bayoumi M.A.
      Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt.
      observed that acidified L. rhamnosus cell-free supernatants (CFS) significantly inhibited all pathogens tested, and because the neutralized CFS also inhibited the pathogens, other factors (peptides or bacteriocins) besides organic acids were reckoned to have inhibitory activity. The bioactive peptides contained in milk proteins can be released by the proteolytic enzymes from the human gut or by probiotic LAB (
      • Elfahri K.R.
      • Vasiljevic T.
      • Yeager T.
      • Donkor O.N.
      Anti-colon cancer and antioxidant activities of bovine skim milk fermented by selected Lactobacillus helveticus strains.
      ). The L. helveticus strains in skim milk released bioactive peptides, which had antioxidant and anti-colon cancer activities that were strain specific and dependent on pH, time, temperature, and bioactive peptide concentration (
      • Elfahri K.R.
      • Vasiljevic T.
      • Yeager T.
      • Donkor O.N.
      Anti-colon cancer and antioxidant activities of bovine skim milk fermented by selected Lactobacillus helveticus strains.
      ).

      Outcome of Selected Clinical Trials to Determine the Effectivity of Probiotic Yogurt

      The scientific evidence to corroborate the claimed health benefits of fermented products is scanty, due to the huge finances and skills required for such activities (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ). Providing scientific evidence (investigative outcomes) is not the core business of the food industry. This then begs a strong working relationship between research institutions and the food industry. Proving health claims of fermented beverages (dairy or nondairy) is of huge interest to the regulatory bodies, and it ought to be part and parcel of research relating to functional food development.
      Table 6 summarizes clinical trials that indicate the potential effect of consuming probiotic functional yogurt. Summarized reports in Table 6 suggest a strong link between microbial composition, cell concentration, and benefits to the human host, which implies that the health benefits of fermented beverages may be due to 3 possibilities: probiotic content, antimicrobial metabolites, and breakdown of complex food molecules (
      • Marsh A.J.
      • Hill C.
      • Ross R.P.
      • Cotter P.D.
      Fermented beverages with health-promoting potential: Past and future perspectives.
      ).
      Table 6Summary of clinical trials indicating potential effect of consuming probiotic functional yogurt
      Short study aim
      NAFLD = nonalcoholic fatty liver disease.
      Treatment periodProbiotic strains in yogurtMain outcomeReference
      Investigate the effect of consuming probiotic yogurt on glycemic indices and endothelial dysfunction markers in patients with metabolic syndrome8 wkLactobacillus acidophilus LA5; Bifidobacterium lactis Bb12Probiotic yogurt significantly reduced blood glucose level and exerted a positive effect on metabolic syndrome treatment.
      • Rezazadeh L.
      • Gargari B.P.
      • Jafarabadi M.A.
      • Alipour B.
      Effects of probiotic yogurt on glycemic indexes and endothelial dysfunction markers in patients with metabolic syndrome.
      Determine the effect of selected probiotic strains provided in either yogurt or capsule form on blood pressure and serum lipid profile6 wkL. acidophilus LA5; B. lactis Bb12The probiotic strains did not improve cardiovascular risk factors.
      • Ivey K.L.
      • Hodgson J.M.
      • Kerr D.A.
      • Thompson P.L.
      • Stojceski B.
      • Prince R.L.
      The effect of yoghurt and its probiotics on blood pressure and serum lipid profile; a randomized controlled trial.
      Investigate the effects of a fortified yogurt with whey protein, calcium, vitamin D, prebiotic fiber, and probiotic cultures compared with a low-fat plain yogurt for weight loss in overweight and obese adults with metabolic syndrome on a caloric-restricted diet10 wkB. lactis Bb12Consuming fortified yogurt for 10 wk improved body composition and metabolic parameters while on a caloric-restricted diet.
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      Investigate effects of probiotic yogurt consumption on obesity values, fasting insulin, insulin resistance, and serum leptin and adiponectin levels in NAFLD patients by a randomized double-blind controlled clinical trial8 wkL. acidophilus LA5; B. lactis Bb12Study suggests that probiotic yogurt consumption improved body mass index and insulin levels and may be applicable in reducing risk factors of NAFLD.
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      Probiotic yogurt improves body mass index and fasting insulin levels without affecting serum leptin and adiponectin levels in non-alcoholic fatty liver disease (NAFLD).
      Assess effects of probiotic and conventional yogurt on blood glucose and antioxidant status in type 2 diabetic patients6 wkL. acidophilus LA5; B. lactis Bb12Probiotic yogurt improved fasting blood glucose and antioxidant status in type 2 diabetic patients.
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      Probiotic yogurt improves antioxidant status in type 2 diabetic patients.
      Investigate the influence of a synbiotic fermented milk on the fecal microbiota composition of 30 adults with irritable bowel syndrome4 wk and 1 wk follow-upL. acidophilus LA5; B. lactis Bb12Daily consumption of a synbiotic fermented milk had a short-term effect on the amount of studied probiotic strains in the fecal microbiome of IBS patients.Bogović Matijašić et al. (2016)
      Investigate the effects of probiotic yogurt consumption on some metabolic factors in NAFLD patients8 wkL. acidophilus LA5; B. lactis Bb12Probiotic yogurt improved hepatic enzymes, serum total cholesterol, and low-density lipoprotein cholesterol levels in NAFLD patients.
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      Effects of probiotic yogurt consumption on metabolic factors in individuals with nonalcoholic fatty liver disease.
      Evaluate effect of consuming fermented milk containing Lactobacillus rhamnosus SD11 on levels of oral microbiota in vivo and whether strain SD11 can colonize in the human mouth4 wkL. rhamnosusConsuming fermented milk containing L. rhamnosus SD11significantly reduced Streptococcus mutans and total bacteria in the probiotic test group.
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      1 NAFLD = nonalcoholic fatty liver disease.
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      ). Intake of yogurt incorporated with probiotic strains B. lactis Bb12 and L. acidophilus LA5 during a treatment period of 8 wk was observed to reduce blood glucose levels and endothelial dysfunction in relation to vascular cell adhesion molecule (marker) in persons with metabolic syndrome (
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      observed that daily consumption of fermented milk with added L. rhamnosus SD11 reduced Streptococcus mutans and total bacteria in the mouth of participants, and the levels of lactobacilli significantly increased in the probiotic group compared with the control groups. Other reports indicate that lactobacilli are able to prevent oral health challenges including dental caries (
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      ), and gingivitis (
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      ). The mechanism relates to enhancement of friendly microbiota and inhibition of pathogens from adhering to the mucosa in the buccal cavity (
      • Piwat S.
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      ). Inhibition may also result from the production of bacteriocins, organic acids, and antimicrobial proteins (
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      ). Providing clinical evidence may be hampered by the financial resources, multiple participants, and interdepartmental involvement of skilled personnel (nurses, nutritionists, dieticians, food scientists, and clinical associates) required to provide corroborated findings. Large-scale genome-wide analysis demonstrates that closely related LAB strains occur in both food and gut environments and provides unprecedented evidence that fermented foods can be regarded as a possible source of LAB for the gut microbiome (
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      ).

      CONCLUSIONS AND RECOMMENDATIONS

      Fermentation of yogurt is beneficial, as it leads to low pH and harsh conditions for some foodborne pathogens, and improved sensory attributes, but this is microbial species or strain dependent. Organic acids attributed to fermentation may affect yogurt's viscosity and gelling properties.
      The potential health benefits of strains claimed to be probiotic and GRAS were presented. Yogurt is a vehicle, arguably the most preferred, to deliver probiotics to the health-conscious consumer. Manufacturers of probiotic beverages need to ensure conformance to regulations.
      Development of probiotic yogurt requires selection of strains with sound probiotic properties, safety, technological, sensory and functional properties. In terms of safety, strains of Lactobacillus and Bifidobacterium genera are GRAS. Safety encompasses delineative molecular identification, absence of transferable antibiotic resistance genes and hemolysis by the probiotic organisms.
      Sensory attributes of probiotic yogurt can negatively affect consumer acceptability. Hence, probiotic strains selected need to improve sensory quality and be technologically suitable for viability to be above the recommended therapeutic minimum during processing and storage conditions.
      Evidence of efficacy or clinical outcomes must be submitted to regulatory authorities for consideration of functional claim approval. Claims solely based on in vitro and in vivo animal models are considered inadequate. Efficacy of the probiotic strain(s) in yogurt must be investigated, confirmed and approved in accordance with well-designed human clinical trials.
      The generally accepted therapeutic minimum is 106 cfu/mL for probiotic strains in yogurt over a period of 28 to 30 d of cold storage and probiotic yogurt should comply with regulations. The use of the word probiotic on product labels is restricted in some countries such as South Africa. In the EU, using the word probiotic on a label is a health claim, and the EFSA requires health claim approval, contrary to the FDA's stance that allows the use of the term probiotic. Countries such as South Africa need to clarify contradicting clauses in regulations promulgated by different government departments in relation to minimum starter and probiotic viability and whether probiotic strains may be added to yogurt.
      The culture-dependent plate count method is most often used to enumerate viable cells in products such as yogurt; however, the VBNC (viable and stressed cell count) may not be enumerated. Probiotic and yogurt cultures are closely related and may not easily be differentiated during enumeration, unless selective or differential plate count methods for yogurt are standardized.
      Flow cytometry is neither a culture-dependent technique nor a molecular-based approach to assessing probiotic cell content in yogurt, and the FC method can differentiate between viable and damaged or dead cells by employing the right fluorescence dyes. Culture-independent techniques rely on nucleic acid analysis, and they include PCR, RT-PCR, and RT-qPCR. Differentiating between viable and stressed (VBNC) cells requires expertise in molecular biology. Use of EMA-PCR and PMA-PCR provide alternative techniques for estimating viable cells (dependent on good integrity of the cell walls). The DNA of damaged cells is intercalated with dyes resulting in a lower nonstressed (viable) cell count.
      The NGS approaches can be employed to determine the microbial diversity and proportion of species composition in probiotic yogurt. However, the NGS approaches may not reveal if DNA results obtained are from viable cells only and not from stressed (VBNC) cells, hence, employing plate count methods can counter-check viability. The NGS approaches require advanced training in bioinformatics skills, but they reliably confirm whether probiotic yogurt conforms to regulations.

      ACKNOWLEDGMENTS

      MilkSA (Pretoria, South Africa) is acknowledged for funding the study and the postdoctoral fellowship for the first author at the University of Pretoria. The views expressed are not those of the funding organization. None of the authors have any conflicts of interest with regard to views expressed in this article.

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